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Submitted SNP(ss) Details: ss80750537           
Submitter
HandleKRIBB_YJKIM
Submitter SNP IDKHS1000275
RefSNP(rs#)rs132964
Submitted Batch IDKHB2007_2_FP-TDI
Submitted DateNov 26, 2007
Publication Cited16376517
First entry to dbSNPNov 26 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodFP-TDI
Ascertainment Samplesize178
PopulationKHP_Korean
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss80750537|allelePos=85|len=285|taxid=9606|alleles='C/T'|mol=Genomic
 ATATATCACA TTCATTTGTT CCACAAACCT GATCTACGCC AGGCACCTGC TGGGGGCTGG
 GCACACTGTC ATGAACCCAA CAGA
 Y
 ACAGTCCCTC CCCTCACAAG GTCTGTGGCC TACCAGGAAA GCAGGATCCC CAGTGCAGGG
 ACGGGTGCCA TGGGATGCCC AGCAGAAACT CCTAATCCAG CCTGCAGGTC AGGGGAGGGC
 AAGAGGAAGG AAGGCAGGCA AAGAAAGGGG AGTATTCCAG GCCACAGCAA GAGCCTGGGC
 AAAGGCCAGG AGCACAAGGC

  Submitted Frequency for ss80750537 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
KHP1
EAST ASIA
178C=0.90449399
T=0.09550600
C/C=0.80898899
C/T=0.19101100
T/T=0.00000000
KHB2007_2_FP-TDIKRIBB_YJKIM


  dbSNP summary of Genotypes for ss80750537 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
KHP_Korean
EAST ASIA
178178C=0.90449440
T=0.09550562C/C=0.80898875
C/T=0.19101124
Pr(chiSq=0.180,df=1)
=0.752
Genotype
Freq.

  Submitted individual genotype for ss80750537 back to top
There is no individual genotype data for ss80750537.