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Submitted SNP(ss) Details: ss80750590           
Submitter
HandleKRIBB_YJKIM
Submitter SNP IDKHS1000638
RefSNP(rs#)rs273884
Submitted Batch IDKHB2007_2_FP-TDI
Submitted DateNov 26, 2007
Publication Cited16376517
First entry to dbSNPNov 26 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodFP-TDI
Ascertainment Samplesize178
PopulationKHP_Korean
Allele
Observed AlleleA/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 2
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss80750590|allelePos=70|len=370|taxid=9606|alleles='A/T'|mol=Genomic
 TACCTCATCT GAGTTGCTAA GACTATTGCC AAGAAACACT AAAATTCAAA CCTATTATGT
 GTTTGAAAT
 W
 CAAAATTTTC TATGTGATGT CAAAGGCCAA AATTGGTCTA ATATAGCAAG TTGTTCATCT
 CTGAGCAAAA ATACACTCGT CCTTACATCA AAAATGGCAA ATTTACAAAT TAACAATGTG
 AATACAATCA GTCTGAGGCA CCATTATCCC TGAATCTCAA TGAACAGAAA TGTAAGAACA
 TCCTGGCATT TACAGTCAAT CACTGGTGTG AATGTGCAGG TGTGTTCTAG ATTTATGTAT
 TCGAGGATGT ATGAAGTCAA ACGACATAAG TTTAATTAAA ATAATCAATT ACTTATTTAA

  Submitted Frequency for ss80750590 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
KHP1
EAST ASIA
178T=0.57865202
A=0.42134801
A/T=0.41573000
T/T=0.37078699
A/A=0.21348301
KHB2007_2_FP-TDIKRIBB_YJKIM


  dbSNP summary of Genotypes for ss80750590 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
KHP_Korean
EAST ASIA
178178T=0.57865167
A=0.42134830A/T=0.41573033
T/T=0.37078652
A/A=0.21348314
Pr(chiSq=1.935,df=1)
=0.200
Genotype
Freq.

  Submitted individual genotype for ss80750590 back to top
There is no individual genotype data for ss80750590.