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Submitted SNP(ss) Details: ss107938271           
Submitter
Handle1000GENOMES
Submitter SNP IDCEU.trio.12.15.2008_17_chr1_747503
RefSNP(rs#)rs3115853
Submitted Batch IDpilot_2_CEU_trio_final_release
Submitted DateMar 29, 2010
Publication CitedN.D.
First entry to dbSNPDec 15 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTRIO_CONSENSUS_CALLS
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:113

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss107938271|allelePos=201|len=401|taxid=9606|alleles='G/A'|mol=Genomic
 ACCCTGTCTA CACTACCTGC CTGTCCAGCA AATCCACTCT GTCTACACTA CCTGGCTGTC
 CAGCAGATCC ACCCTGTCTA CACTACCTGC CTATCCAGCA GATCCACCCT GTCTATACTA
 CCTGCCTGTC TAGCAGATCC ACCCTGTCTA TACTACCTGC CCATCCAGCA GGTCCACCCT
 GTCTACACTA CCTCCCTGCC
 R
 AGTAGATCCA CCCTGTCTAC ACTACCTGCC TGGCCAGAAG ATCCACCCTG TCTACACTAC
 CTTCCTTGCC AGTAATGCAC GCTATCTACA CTACCTGCCT GGCTAGCAGA TCCACGCTGT
 CTATACTACC TCCCTGTCCA GTAGACCCAC CCTGTCTATA CTACCTCCCT GGCCAGCAGA
 TCCACCCTGT CTATACTACC

  Submitted Frequency for ss107938271 back to top
There is no frequency submission for ss107938271.


  dbSNP summary of Genotypes for ss107938271 back to top
No sufficient data to compute Hardy-weinberg probability for ss107938271.


  Submitted individual genotype for ss107938271 back to top
There is no individual genotype data for ss107938271.

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