| Submitter | | Handle | SC_SNP | | Submitter SNP ID | NT_004321.15_1022705 | | RefSNP(rs#) | rs9424286 | | Submitted Batch ID | CHR1_Overlap_SNPs | | Submitted Date | Oct 22, 2003 | | Publication Cited | [1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases | | First entry to dbSNP | Oct 22 2003 12:00:00:000AM |
| | Resource Links | | GenBank Accession | NT_004321
| | Submitted Gene Name | N.D | | Submitted Gene ID | N.D. | | Submitted SNP Synonyms | N.D | | Submitted linkout | N.D |
| | Assay | | Species | Homo sapiens | Molecular
Type | Genomic | | Method | CHR1_OVERLAP_SNPS | | Ascertainment Samplesize | 16 | | Population | N.D. |
| | Allele | | Observed Allele | G/T | | Ancestral Allele | N.D. | | Allele Origin | N/A | | SNP Class | SNV | | CpG Code | Unknown |
| | | Variation | | Frequency Submission | N.D. | | Genotype Summary | N.D. | | Genotype Submission | N.D. | | Haplotype | N.D. |
|
| Comment | | sequence:1bB531C17-14e10.q1cposition:263quality:35sequence:1bB531C17-4b03.q1cposition:-104quality:39sequence:1bB531C17-17d05.q1cposition:209quality:43sequence:1bB531C17-16h02.q1cposition:283quality:29sequence:1bB531C17-18a01.p1cposition:-174quality:39sequence:1bB531C17-11h09.p1cposition:214quality:40sequence:1bB531C17-10e12.q1cposition:256quality:43sequence:1bB531C17-22g04.q1cposition:104quality:37sequence:1bB15E13-1m16.q1kposition:184quality:56sequence:1bB531C17-22e12.p1cposition:-148quality:35sequence:1bB531C17-17c05.q1cposition:201quality:43sequence:1bB531C17-23e10.p1cposition:223quality:46sequence:1bB15E13-1f18.q1kposition:-394quality:51sequence:1bB531C17-9d12.p1cposition:188quality:51sequence:1bB531C17-3h11.p1cposition:51quality:29 |
>gnl|dbSNP|ss12992566|allelePos=1888|len=3888|taxid=9606|alleles='G/T'|mol=Genomic TTTTGGAATT CCTGCACTTT TGAGTGGTGT AAACCAAAAC CAAAAttctt ttttttttct
tgagacggag tctcgctctg tcacccaggc tggagtgcag tgatgctatc ttggttcact
gcaacctccg cctcctgggt tcaagcaatt ctcctgcctc agcctcccgc tggaactaca
ggtgcatgcc accgtggccg gttaattttt atattaaccg tgttaatata atttttatat
taaccggttt tcgccatgtt ggccaggctg gtctcgaaca cctgacctca ggtgatctgc
tcgcctcagc cccccaaagt gctgggctca caggcacaag ccaccgcacc cagccCCCAA
ATTCttattt atttatttat ttatttattg agacagagtc ttgctctgtt acccaggctg
gagtgcagtg gttccagctc ggctcattgc agcctcaact tccctggctc cagtgatcct
cccacctcag cccctgagta gctggtacca caggcatgtg ccaccacgcc tggctaattt
ttgtattttt tgtagagctg gggttttgcc atgttgccta ggctggtctc aaacccatga
actcaagcaa tccacctgcc tcaacctccc aaattgctag gattacaggt gtgagtcacc
aaacctggcc Aaaaaataaa attctagagg ctgggcacgg tggctcatgc ctgtaatccc
agcactttgg aaggccgagg cgggcggatc accaggtcag gagatcgaga ccatcctggt
gaacacggtg aaaccccgtc tctactaaaa atacaaaaaa aattagccgg gcttggtggc
aggcgcctgt agtcccagct actcgggagg ctgaggcagg agaatggcaa gaacccagag
ggcggagctt gcagtgagcg gagattgcgc cactgcactc cagcctgggc gacagagtga
gactccgtct caaaataaat aaataaaaat aaaataaaat tctaagcccc ccaaccatct
gagtggaccc ctcctctggg ccaagggcat tccctagtta atctgaaaaa ctagttcagg
ccatgatggg aagggtcgga tgtggagggg taggggttgg acatgcctca ttatattctc
ctccctttgg gaattcaggc ccacctgacc atcattaata tcaacacaga ctttaagact
gacaaagcca ggccaggtgt ggtggctcat ggctgtaatc ccagcacttt gagaggccat
ggcgggtgga tcacttgagg tcaggagttt gagaccagcc tgaccaacat ggtgaaaacc
catccctact aaaaatacaa aaattagctg ggcatggtgg cgggcgcctg taatccaagc
tactcgggag gctgaggcag gagaattgct taaacctagg aggcggaggt tgcagtgagc
caagattgca ccactgcatt ccagcctggg tgacagagcg agactccatc tcaaaataac
aacaacaata aaagactgac aaagctgact ctttgtagca atgataccaa attctagcct
gtttctagta gagcattatg tgactgatca aggccctgaa ggaaattgaa gtattttacc
ccaaattata tttccttgct gtatcttaaa acaatcctgc aaggctgcct attgtggggg
aaatccacat tctgaagata gtatccttgc tttgctaggc ctttttcctg atccaggaga
gaatcaactC TGATAATAAA TAAATAAACA AAGAAAAAAA CAAAAACCAT TTACAggccg
ggcgcggtgg ctcactcctg taatcccaac actttgggag gctgaggcag gcggatcacc
tgaggtcagg agttcaagac cagcctg
K
ccaacatggt gaaaccccgt cttaactaaa aatacaaaaa ttagccaggt ggggtggtgg
gcgcccgtga tcccagctac ttggaggcta gggcaggagc ttcaacccag gaggcagaag
ttgcactgag ctgaaattgc accattacac tccagcctgg gcaacagagg gaggctccat
ctcaaaaaaa aaaaaaaaaa aaaaaaaaaa aaaAAAagaa cttccagggg ctaattttga
aggaaaccag gctcagagac ccagatgtgg atcctactgc tctggggcag ttaggaagag
tgagcccacc actactgggc caaagtcagg atgatgcaag ctggaccttc agacagggtg
ttactcgaga tcaccttcgg aacaagacat gcagccctgc acccccctgc acccccttgc
acccttctgc atcctcctgc accaccccca catgtttccc acaccaagtt ttccttccaa
aacctctcac tcagcccaga agacagaggg tctcttggag gcatgagccc agccatgtcc
catcggctgg catttgttta ataaacggct ttccttccac cacacctcgc ttctcatgtt
tttggtcttt gagcagccac gcttgagctg gttgcaGatc tggtgccttg tgtgaggcac
tgtgttgtga gtggctcagc ctgtgtacct ggtttccaat gaaggcagag attggccaca
gcagtcccag gatttaccca ctcttgctgt caggcaggac agcagctgct tgaaaatgcc
agctgctcat ggccagctga ccccaaggct aggaccttag ggaattccta gtggctgccg
agactgcctt tgtcttgggg attttccctt ccctctcctt catgacatca gcatctctca
tgctctgctg gtgggaggga agcagtatgt gggatgtgaa ctgaagtgca cctggaaatc
ctctgcatct gccatctggg gctctagctg tctagagcta gtattggtag tctgtggtgc
cacctgggtc tctgtgccat ctggacctaa cgcaggtaac tctgtggtgc cgcctgggtc
tctgtgccat ctcgacctaa cgcaggtcgc tctgtggtgc cgcctgggtc tctgtgccat
ctggacctaa cacaggtcac tctgtggtgc cgcctgggtc tctgtgccat ctggacctaa
cgcaggtcac tctgtggtgc tgcctgggtc tctgtgccat ctggacctaa cgcaggtcac
tccatggtgc tgtctgggtc tgggacagga cctcaggact ttgctccaat ctcccctctg
tttggaggga tctgtttgga gggctgtgtc tacattggat ctatttgtgt ttgtgtctct
gtttagtgtt gcacccccct ctgagggtgc ttaggcacag tctgcatccc aatggccaag
actaggtcca tctggttgtc agaaagtagc aagataggct gcccctctcc tcactaggtg
tatttgtaca ttttcacact gctgataaaa acatacctga gactaagaag aaaaagaggt
ttaattgggc ttacagttcc acatggctgg ggaggcctca gaatcatgac gggaggtgaa
aggcacttct tacaaggcgg tggcaagaga aaatgaagaa gatgcaaaag cagaaacccc
tgataaaacc atcagatctc atgagactta ttcactacct tgagaacggt gtgggggaaa
ctgcccccat gattcaaatt acctcccacc ttctccctcc cacaacctgt gggaattatg
ggagtacaat tcaagatgag atttgTGCTG TTATGACCGT CCTTGAAGAT TTCCCTGAAC
CAGTTAACAT TGTCTCTGAT TCAGCGTAGG TACTACATGT TGCTCACAAC AATTGAAACT
GCCTTAATCC AATTTCTGCC TGATGATGAC CTATTCTTTC TTTTTCAAAG GTTTCAGTCT
GTGCCCAGAG CAAGGTCTTC
There is no frequency submission for ss12992566.
No sufficient data to compute Hardy-weinberg probability for ss12992566.
There is no individual genotype data for ss12992566.
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