| Submitter | | Handle | SC_SNP | | Submitter SNP ID | NT_004321.15_1043867 | | RefSNP(rs#) | rs9424287 | | Submitted Batch ID | CHR1_Overlap_SNPs | | Submitted Date | Oct 22, 2003 | | Publication Cited | [1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases | | First entry to dbSNP | Oct 22 2003 12:00:00:000AM |
| | Resource Links | | GenBank Accession | NT_004321
| | Submitted Gene Name | N.D | | Submitted Gene ID | N.D. | | Submitted SNP Synonyms | N.D | | Submitted linkout | N.D |
| | Assay | | Species | Homo sapiens | Molecular
Type | Genomic | | Method | CHR1_OVERLAP_SNPS | | Ascertainment Samplesize | 8 | | Population | N.D. |
| | Allele | | Observed Allele | T/C | | Ancestral Allele | N.D. | | Allele Origin | N/A | | SNP Class | SNV | | CpG Code | c/t_g |
| | | Variation | | Frequency Submission | N.D. | | Genotype Summary | N.D. | | Genotype Submission | N.D. | | Haplotype | N.D. |
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| Comment | | sequence:1bB15E13-1o03.p1kposition:292quality:56sequence:1bB531C17-22c06.p1cposition:196quality:56sequence:1bB531C17-1b03.q1cposition:-359quality:29sequence:1bB531C17-16g12.q1cposition:215quality:42sequence:1bB15E13-2m06.q1kposition:183quality:51sequence:1bB531C17-2b09.q1cposition:201quality:56sequence:1bB531C17-22g07.p1cposition:124quality:56 |
>gnl|dbSNP|ss12992578|allelePos=201|len=401|taxid=9606|alleles='T/C'|mol=Genomic AGGTAACAAC TCGAATGCAA ACACAAAGGC TCCCACATTC TGGAGATAAC CAGGGGAAAA
GATGTATGTG CAGTGAAAAC TGCTTCTATT GGGTAGAAAA GGGGCAGGAT GCCCTGTAGG
AAAAGCAGCC CCTGGAGGAA GGCGGATGGA AGCGGGGCAG GACGGCGCCT CTGTCTGGGG
TGGAGGAAGG CAGATGGAAG
Y
GGGGCAGGAT GGCGGCCTCT GTCCAGGGTT CTTCCAAGAT GCCTGATTCT ATCGACCCGG
AAACATGTCT TCTGTAATTA CAGAACTTAA TTCTTTAAAG TCCCCTAGAA ATGTAATATA
AAATGAATGT ATTTACAGTT GGTGGCACTG CTAGCCAGGG CTCACCCAAG TCCCTCCAAC
ACAGGGCCAC TGGGACCCCC
There is no frequency submission for ss12992578.
No sufficient data to compute Hardy-weinberg probability for ss12992578.
There is no individual genotype data for ss12992578.
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