Submitter | Handle | SC_SNP | Submitter SNP ID | NT_004559.10_103276 | RefSNP(rs#) | rs1805404 | Submitted Batch ID | CHR1_Overlap_SNPs | Submitted Date | Oct 22, 2003 | Publication Cited | [1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP [2] SSAHA: A Fast Search Method for Large DNA Databases | First entry to dbSNP | Oct 22 2003 12:00:00:000AM |
| Resource Links | GenBank Accession | NT_004559
| Submitted Gene Name | N.D | Submitted Gene ID | N.D. | Submitted SNP Synonyms | N.D | Submitted linkout | N.D |
| Assay | Species | Homo sapiens | Molecular Type | Genomic | Method | CHR1_OVERLAP_SNPS | Ascertainment Samplesize | 11 | Population | N.D. |
| Allele | Observed Allele | G/A | Ancestral Allele | N.D. | Allele Origin | N/A | SNP Class | SNV | CpG Code | Unknown |
| | Variation | Frequency Submission | N.D. | Genotype Summary | N.D. | Genotype Submission | N.D. | Haplotype | N.D. |
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Comment | sequence:WUfgl59e12.s1eposition:554quality:53sequence:1bA15H13-3f10.p1cposition:-343quality:29sequence:L3460-31h07.s1cposition:-350quality:35sequence:1bA15H13-1b01.q1cposition:167quality:35sequence:1bA15H13-4e08.p1cposition:307quality:40sequence:L3460-31h11.s1cposition:-303quality:39sequence:1bA125A15-10b05.q1cposition:195quality:35sequence:1bA15H13-18f12.p1cposition:229quality:29sequence:1bA15H13-7h09.p1cposition:-150quality:35sequence:1bA15H13-7b11.p1cposition:-180quality:43 |
>gnl|dbSNP|ss13004660|allelePos=201|len=401|taxid=9606|alleles='G/A'|mol=Genomic AGGAGGTGTT GCTGAAATAA CATGGGCACC ATACGCTTGA TCTGCACATG TGGGAGAGGG
CAAGCTGGGG GAGGTTTGCT TTGCTCTCTG AGACGAGGCC CTCCTGGGAG CTTCAGGGTG
GGGGCTGAAT GCCCATGCTG CCCCAGTATG TACACACCTG TCACTCCTCC AGCTTCCGCT
GTCTTCTTGA CTTTCTGCTG
R
TCATCCCACC GAAGCTCAGA GAACCCATCC ACCTCAACGT CAGGGTGCCG GATGGAGTGG
CCCACCTTCC AGAAGCAGGA GAAGTGGTAC CAGTGTGGGA CTTTTCCATC AAACATGGGC
GACTAGAAGG AAGAGAAACA GAGGGAAGTA AGTAAGCAGT TAACTTTTGA CTTAGACCCA
CTAGACCTTG ACCTTGACCT
There is no frequency submission for ss13004660.
No sufficient data to compute Hardy-weinberg probability for ss13004660.
There is no individual genotype data for ss13004660.
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