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Submitted SNP(ss) Details: ss13004660           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004559.10_103276
RefSNP(rs#)rs1805404
Submitted Batch IDCHR1_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_OVERLAP_SNPS
Ascertainment Samplesize11
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:WUfgl59e12.s1eposition:554quality:53sequence:1bA15H13-3f10.p1cposition:-343quality:29sequence:L3460-31h07.s1cposition:-350quality:35sequence:1bA15H13-1b01.q1cposition:167quality:35sequence:1bA15H13-4e08.p1cposition:307quality:40sequence:L3460-31h11.s1cposition:-303quality:39sequence:1bA125A15-10b05.q1cposition:195quality:35sequence:1bA15H13-18f12.p1cposition:229quality:29sequence:1bA15H13-7h09.p1cposition:-150quality:35sequence:1bA15H13-7b11.p1cposition:-180quality:43

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss13004660|allelePos=201|len=401|taxid=9606|alleles='G/A'|mol=Genomic
 AGGAGGTGTT GCTGAAATAA CATGGGCACC ATACGCTTGA TCTGCACATG TGGGAGAGGG
 CAAGCTGGGG GAGGTTTGCT TTGCTCTCTG AGACGAGGCC CTCCTGGGAG CTTCAGGGTG
 GGGGCTGAAT GCCCATGCTG CCCCAGTATG TACACACCTG TCACTCCTCC AGCTTCCGCT
 GTCTTCTTGA CTTTCTGCTG
 R
 TCATCCCACC GAAGCTCAGA GAACCCATCC ACCTCAACGT CAGGGTGCCG GATGGAGTGG
 CCCACCTTCC AGAAGCAGGA GAAGTGGTAC CAGTGTGGGA CTTTTCCATC AAACATGGGC
 GACTAGAAGG AAGAGAAACA GAGGGAAGTA AGTAAGCAGT TAACTTTTGA CTTAGACCCA
 CTAGACCTTG ACCTTGACCT

  Submitted Frequency for ss13004660 back to top
There is no frequency submission for ss13004660.


  dbSNP summary of Genotypes for ss13004660 back to top
No sufficient data to compute Hardy-weinberg probability for ss13004660.


  Submitted individual genotype for ss13004660 back to top
There is no individual genotype data for ss13004660.

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