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Submitted SNP(ss) Details: ss13757760           
Submitter
HandleBCM_SSAHASNP
Submitter SNP IDchr1.NT_004321.15_1040240
RefSNP(rs#)rs9286791
Submitted Batch IDBCM_HTWD_SNPS_200310
Submitted DateNov 05, 2003
Publication Cited[1] SNPs detected by comparing chromosome 16 reads to NCBI build 34 Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPNov 5 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodBCM_HTWD_SNPS_200310
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position quality63454768 715 46

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss13757760|allelePos=201|len=701|taxid=9606|alleles='C/T'|mol=Genomic
 CCCGCGTGAT TACGTTCCAG GCCAGAAGAC AGAACGCGCC AGGCACCGCG GGCTCCCCGC
 CAGCCTGCTG CCCACGGTTC CTCGTGGGGT TCCCACTCTC TTCATCCCTG CTCTTCCTGA
 GCCACGCCAC ATGCACTTGC CCTGCAGAAT GTGGGGCTTA TGCAGGCCTG ACTGCCTGGG
 CAGCCAGCTT CTTTCCTTTA
 Y
 GACCAGCTGT GGGACCGTCT GCATGGGGAC AGGGAGCTCA TCTCGTCCTC CTGTTGGATA
 TAAACGCGGG ATCGCTGGTT CCCTGAGTCT TCTGGACATT CGAGTTGTTC CTGGTTCCTT
 CCCTTCTATT TAAACAACAC TCACGAggct gggcgcggtg gctcacgcct gtaatcccaa
 cactttggga ggcagaggtg ggtggatcac ctgaggtcag gattttgaga ccagcctggc
 cagcttggtg aaaccccgtc tctactaaaa acacaaaatt agctgggtgt ggtggcgcat
 ctcgtgtccc caacagctaa tcccagctac tcaggaggct gaggcaggag aattgcttga
 acgtgagagg cggaggttgc agtgagccga gatcacatca gtgcactcca gcccgggcaa
 cagggtgaga ctccatctca aaaacaaaCA ACGCTTCCCA GGGACACTGC TCCAGCCGCT
 CTCCCATTCT CTGGTGGACC

  Submitted Frequency for ss13757760 back to top
There is no frequency submission for ss13757760.


  dbSNP summary of Genotypes for ss13757760 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU108108T=0.55555558
C=0.44444445C/T=0.48148149
T/T=0.31481481
C/C=0.20370370
Pr(chiSq=0.034,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
8282T=0.57317072
C=0.42682928C/T=0.41463414
T/T=0.36585367
C/C=0.21951219
Pr(chiSq=0.955,df=1)
=0.343
Genotype
Freq.
HapMap-JPT8686C=0.50000000C/T=0.44186047
T/T=0.27906978
C/C=0.27906978
Pr(chiSq=0.581,df=1)
=0.479
Genotype
Freq.
HapMap-YRI106106T=0.96226418
C=0.03773585T/T=0.92452830
C/T=0.07547170
Pr(chiSq=0.006,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss13757760 back to top
There is no individual genotype data for ss13757760.