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Submitted SNP(ss) Details: ss16384116           
Submitter
HandleCSHL-HAPMAP
Submitter SNP IDCSHL-HuAA-200402.chr1.NT_077383.3_1015544
RefSNP(rs#)rs11248975
Submitted Batch IDCSHL-HuAA-200402
Submitted DateFeb 17, 2004
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPFeb 17 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCSHL-HUAA-200402
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityHuAA503b19000149773802.F 413 57

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss16384116|allelePos=501|len=763|taxid=9606|alleles='A/C'|mol=Genomic
 CCTGGGAGCC CCAACCACTC ATCCCCCCGA CATGTGTGCT CAAGGCCAGG GCTGTGGTCT
 GGGTTCAGAT CTCGACTTGG CGCCTGGTTA AACCAATGCT AGGACCAAGA GATTCGATAG
 CAAgttatga actgaacatt tgtgaccccc aaattcacat gccatcaccc ccactatggc
 tatatttgga gatggggccc ctaagggagt aattaaggtt aaatgaggtc ctgagggtgg
 ggccctgtgg acccaaggcg ggtactattg tcctcataag aagagacacc agagaactca
 ttccctctct ccacgcacac acaaagcgag atggcaacag cccacggcca agagaagggt
 gaaacctctc tggtaataaa gcttaccttg ctggcacctt gatcttggac cttccaacct
 ccagaactgt gagaaataaa tttctgttat ttaagccacc caatccatgg tattttgtta
 tggcagcctg agcagaccaG
 M
 Cacaagctat gtgacctcag gcaggtttct tagtctcccc atgcctcagt ttcctcatat
 gtgaGCTCTG AGGACCGTAA GCACACATGA CAAAGCTCAG TCAGGGTGGA GTCCCGCACC
 AGGTGGCAGC TGCTCCCATG GCTGTCCCCT GAACAAATTC TGCACCTGCA ATGCCCTTCT
 CCTCCCTCCT GGCACCTGAA TCCTACCCTT CTTCCTAGTT CACCCCTGGG ACCCCTTCTT
 GGCCTCCTGC ATGGTCTCTT TC

  Submitted Frequency for ss16384116 back to top
There is no frequency submission for ss16384116.


  dbSNP summary of Genotypes for ss16384116 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120A=0.57499999
C=0.42500001A/C=0.51666665
A/A=0.31666666
C/C=0.16666667
Pr(chiSq=0.196,df=1)
=0.752
Genotype
Freq.
HapMap-HCB
EAST ASIA
8282A=0.52439022
C=0.47560975A/C=0.46341464
A/A=0.29268292
C/C=0.24390244
Pr(chiSq=0.206,df=1)
=0.655
Genotype
Freq.
HapMap-JPT8888C=0.60227275
A=0.39772728A/C=0.43181819
C/C=0.38636363
A/A=0.18181819
Pr(chiSq=0.428,df=1)
=0.527
Genotype
Freq.
HapMap-YRI116116A=0.65517241
C=0.34482759A/A=0.48275861
A/C=0.34482759
C/C=0.17241380
Pr(chiSq=3.253,df=1)
=0.100
Genotype
Freq.

  Submitted individual genotype for ss16384116 back to top
There is no individual genotype data for ss16384116.

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