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Submitted SNP(ss) Details: ss230395406           
Submitter
Handle1000GENOMES
Submitter SNP IDpilot_1_CEU_35_chr1_712533
RefSNP(rs#)rs116030099
Submitted Batch IDphase_1_vqsr_v2b_sites_june_2011
Submitted DateJul 20, 2011
Publication CitedN.D.
First entry to dbSNPMay 1 2010 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodLOW_COVERAGE
Ascertainment Samplesize120
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence
Variation
Frequency Submissionpopulation count: 1
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:211

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss230395406|allelePos=201|len=401|taxid=9606|alleles='T/C'|mol=Genomic
 AGGGATTGTG TTGAATCTAT ATATTGCTTT GGATAGTATG GATGTTTTAA CACTATTAAT
 TGTCCCAATC CATGAACATG AAATATCTTT CCATTCACTT GTGTCTTCTT CAATTTCTTT
 CATCAATGTT TTATAGTTTT CATTGTGCAG ATCTTTCACT TACCTGGTTA AATTTATTCC
 TACAATTTCA TTCTTTTTGA
 Y
 ACTAGGGTAA ATTGAATTAT TTTCTTGATT TCTATAAATT ATTTCTTATA ATACTCATAC
 TTGTCAGGCC TCTGGGCCCA AGCCTGCATG TATACATCCA GATGGCCTGA AATAACTGAA
 GAATCACAAA AGAAGTGAAA ATGGCCAGTT CCTGCCTTAA CTGGTGACAT TACCTTGTGA
 AATTCCTTCT CCTGGCTCAG

  Submitted Frequency for ss230395406 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
pilot_1_CEU_low_coverage_panel
NORTH AMERICA
120T=0.93333298
C=0.06666700
pilot_1_CEU_mar_20101000GENOMES


  dbSNP summary of Genotypes for ss230395406 back to top
No sufficient data to compute Hardy-weinberg probability for ss230395406.


  Submitted individual genotype for ss230395406 back to top
There is no individual genotype data for ss230395406.