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Submitted SNP(ss) Details: ss2315076           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC0721857
RefSNP(rs#)rs1489396
Submitted Batch ID001018_13
Submitted DateOct 20, 2000
Publication CitedN.D.
First entry to dbSNPOct 20 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTSC-SANGER-19-26
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 12
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss2315076|allelePos=333|len=594|taxid=9606|alleles='C/T'|mol=Genomic
 AGGATTCATC GTTTACTCTA AATCAAAGTT TCAAGCATTA TGACTAATAT ATAGGTGCTC
 TATATTTTTA TAATGTTTCT GCATGAAAAT GGTGATAATA CAGCAGGTCA AAGGAATTAT
 CACTCAAACG TTTAATTAAA TCACTCATTA GTAAGTTGTA GACACTATTC TGTAAGCCAT
 TGTAGTTGCT TATCTTTGCT TTAGTAATTA TAATTTTATA GCTTGCTTGG TTACATACAC
 ATATTATATT TTATTTAATG CAAAAAAAGT TAAACCATGA GTGCCATAGT GAAATTAAAA
 AATTAAAACT TGAGTCAGAT TTTTAACATA TA
 Y
 ATTACATTGT CCAAACACAT TAAGAATGTT CACTCTACTT GTTATAAATA ATTTAAAACA
 CAATAATGAT GGATGAAATT GTCTCTAAGC TAATATATTT ATGATGTATA TTGATTAAAG
 TAATTTCACT TTTTTTATTT TCATGGTTTT GTTTCAGCTC TCAAAGTTTT CTTTTTTGAT
 TCATATAACA TGAAACATAT TCATCCTCAT ATGAATATGG ATGGAGACTA CATAAATATA
 TTTCCAAAGA GAAAAGCTGC A

  Submitted Frequency for ss2315076 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
CEPH
MULTI-NATIONAL
184T=0.58999997
C=0.41000000
0.484 +/-0.0181_2004SEQUENOM


  dbSNP summary of Genotypes for ss2315076 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226T=0.65929204
C=0.34070796T/T=0.44247788
C/T=0.43362832
C/C=0.12389380
Pr(chiSq=0.137,df=1)
=0.752
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686T=0.74418604
C=0.25581396T/T=0.53488374
C/T=0.41860464
C/C=0.04651163
Pr(chiSq=0.425,df=1)
=0.527
Genotype
Freq.
HapMap-JPT170170T=0.71764708
C=0.28235295T/T=0.49411765
C/T=0.44705883
C/C=0.05882353
Pr(chiSq=0.904,df=1)
=0.343
Genotype
Freq.
HapMap-YRI210210T=0.52857143
C=0.47142857C/T=0.52380955
T/T=0.26666668
C/C=0.20952381
Pr(chiSq=0.274,df=1)
=0.655
Genotype
Freq.
HAPMAP-ASW9696T=0.56250000
C=0.43750000C/T=0.50000000
T/T=0.31250000
C/C=0.18750000
Pr(chiSq=0.012,df=1)
=1.000
Genotype
Freq.
HAPMAP-CHB8282T=0.79268295
C=0.20731707T/T=0.63414633
C/T=0.31707317
C/C=0.04878049
Pr(chiSq=0.051,df=1)
=1.000
Genotype
Freq.
HAPMAP-CHD168168T=0.73214287
C=0.26785713T/T=0.52380955
C/T=0.41666666
C/C=0.05952381
Pr(chiSq=0.326,df=1)
=0.584
Genotype
Freq.
HAPMAP-GIH176176T=0.69886363
C=0.30113637T/T=0.51136363
C/T=0.37500000
C/C=0.11363637
Pr(chiSq=1.047,df=1)
=0.317
Genotype
Freq.
HAPMAP-LWK176176C=0.55113637
T=0.44886363C/T=0.53409094
C/C=0.28409091
T/T=0.18181819
Pr(chiSq=0.556,df=1)
=0.479
Genotype
Freq.
HAPMAP-MKK284284C=0.59154928
T=0.40845069C/T=0.43661973
C/C=0.37323943
T/T=0.19014084
Pr(chiSq=1.322,df=1)
=0.251
Genotype
Freq.
HAPMAP-TSI174174T=0.62643677
C=0.37356323C/T=0.49425286
T/T=0.37931034
C/C=0.12643678
Pr(chiSq=0.273,df=1)
=0.655
Genotype
Freq.

  Submitted individual genotype for ss2315076 back to top
There is no individual genotype data for ss2315076.