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Submitted SNP(ss) Details: ss24243565           
Submitter
HandlePERLEGEN
Submitter SNP IDafd0981461
RefSNP(rs#)rs9286791
Submitted Batch IDAFD_EUR_18-MAY-2004
Submitted DateAug 21, 2004
Publication CitedN.D.
First entry to dbSNPAug 10 2004 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodAFD_CHIP_HYB
Ascertainment Samplesize48
PopulationAFD_EUR_PANEL
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 3
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss24243565|allelePos=101|len=201|taxid=9606|alleles='C/T'|mol=Genomic
 TTCATCCCTG CTCTTCCTGA GCCACGCCAC ATGCACTTGC CCTGCAGAAT GTGGGGCTTA
 TGCAGGCCTG ACTGCCTGGG CAGCCAGC
 TTCTTTCCTT TA
 Y
 GACCAGCTGT GG
 GACCGTCTGC ATGGGGACAG GGAGCTCATC TCGTCCTCCT GTTGGATATA AACGCGGGAT
 CGCTGGTTCC CTGAGTCTTC TGGACATT

  Submitted Frequency for ss24243565 back to top
There is no frequency submission for ss24243565.


  dbSNP summary of Genotypes for ss24243565 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
AFD_EUR_PANEL
NORTH AMERICA
4848T=0.52083331
C=0.47916666C/T=0.54166669
T/T=0.25000000
C/C=0.20833333
Pr(chiSq=0.174,df=1)
=0.752
Genotype
Freq.
AFD_AFR_PANEL
NORTH AMERICA
4242T=0.90476191
C=0.09523810T/T=0.80952382
C/T=0.19047619
Pr(chiSq=0.042,df=1)
=1.000
Genotype
Freq.
AFD_CHN_PANEL
NORTH AMERICA
4848T=0.56250000
C=0.43750000C/T=0.70833331
T/T=0.20833333
C/C=0.08333334
Pr(chiSq=4.629,df=1)
=0.050
Genotype
Freq.

  Submitted individual genotype for ss24243565 back to top
There is no individual genotype data for ss24243565.