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Submitted SNP(ss) Details: ss341924456           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr1-1120495
RefSNP(rs#)rs77026477
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4530
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss341924456|allelePos=251|len=501|taxid=9606|alleles='T/C'|mol=Genomic
 TGCAGAAGCC TTCTAGGTTA GGGGGATGTT CTCTTGGGGA CCCCCGTGAG GACAGGCCCT
 CCGGACAGTC TGGGAGCCAG TCTCCAGGCA CCGTGTGCCC CCAGTTCATG CAGAAGAAGA
 GCCCTCTGTA CATGCTGCTG AAGGAGCACA CGGTGTGGAG CATGGAACAC CTCAACCGCT
 ACATCAGTGA CACGTTCTGG AAGGCCCGGG GCCTCGCCAA GGACTGGGTC TTCACCACCC
 TCAAGGTGCG
 Y
 CCACTGTGCC CTCCAGTCTG GGAGTGAGAT CCCTCGGGGC GGGGGTGTGT GGTCAGGCTG
 GGCACCAGGC ACACAGATGT CCGTGGCGTG CGTGGGCGGC TGCGCTGAAG TGTGACCTGA
 CCGTGTGGAA CCAAACCCTT CCAGCGTCTC TGCTCACTTA GCTGGCAGTG CCTGTCCCCA
 GCAGCCAGCA AAGGCCCGGA CGGAAAGCCC AGTCGGGGGT CTGTCGGCAC GAGTCCCGCG
 GGCAGCCTCG

  Submitted Frequency for ss341924456 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
ESP_Cohort_Populations
NORTH AMERICA
13006T/T=0.97462702
C/T=0.02475800
C/C=0.00061500
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss341924456 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
ESP_Cohort_Populations
NORTH AMERICA
45304530T=0.98233998
C=0.01766004T/T=0.96600443
C/T=0.03267108
C/C=0.00132450
Pr(chiSq=7.717,df=1)
=0.010
Genotype
Freq.

  Submitted individual genotype for ss341924456 back to top
There is no individual genotype data for ss341924456.