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Submitted SNP(ss) Details: ss341932876           
Submitter
HandleNHLBI-ESP
Submitter SNP IDESP2500-chr1-11709892
RefSNP(rs#)rs114834790
Submitted Batch IDESP2500
Submitted DateMar 25, 2011
Publication CitedN.D.
First entry to dbSNPMar 25 2011 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
genomic
MethodEXOME CAPTURE AND SEQUENCING
Ascertainment Samplesize4550
PopulationN.D.
Allele
Observed AlleleC/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss341932876|allelePos=251|len=501|taxid=9606|alleles='C/A'|mol=Genomic
 ACTCAGGAGG GGAGGTGGGT TTCCAGGTTC TCCTGCAAAC ACGGAAGTTG TCAACCTTTG
 CAGACCCGTG GCCCACGTGG CCTCAACCCC TGCAGTGGGG AGGCAGCACC CCCAGGCGGG
 GGGTTCCCCA GCTGGCTCTC CCCTCTGCCT TACCCCGCTC CTCCCAGCCC CATGCCACCC
 CAGGACCCTC TCACCAGTCC TTCACCACGA TGGCCGGCTG AGTCGTGTCC AGCAGCTCCT
 CCCAGTAGCC
 M
 TCAGCCTGCA GGTCAATGAC CTGTGCTTTG CGACACCACC TGGGAGAACT GGAGTTAGGA
 CAGAGCGAAC GCTCCCCCCT TCCCACCTCC TCCACCCCCT TCTCCTTACT CAAAGGAGGA
 GGCGAAGTAC TTCTTGACGC TCTCATCGTG GGTGAACTCC ACCCCACTGT CTCCAGGCAG
 CTCCTCCACC CTCCAGCCGT CCCCACCATG CTCCACGTCA CACCAGCCTT CCAAGTCCTC
 TGTAGGGACA

  Submitted Frequency for ss341932876 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
ESP_Cohort_Populations
NORTH AMERICA
13006C/C=0.99923098
A/C=0.00076900
A/A=0.00000000
ESP6500SINHLBI-ESP


  dbSNP summary of Genotypes for ss341932876 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
ESP_Cohort_Populations
NORTH AMERICA
45504550C=0.99978024
A=0.00021978C/C=0.99956042
A/C=0.00043956
A/A=0.00000000
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss341932876 back to top
There is no individual genotype data for ss341932876.