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Submitted SNP(ss) Details: ss35303067           
Submitter
HandleSSAHASNP
Submitter SNP IDTA-079.chrM_15302
RefSNP(rs#)rs527236045
Submitted Batch IDTA-079
Submitted DateMar 11, 2005
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPMar 11 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTA-079
Ascertainment Samplesize154
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginG:Germline A:Both
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence position qualityUI-E-CI0-aaa-b-07-0-UI.r1 115 40UI-H-DP0-avt-c-11-0-UI.s1 -680 24UI-H-ED0-awz-e-13-0-UI.s1 -647 27UI-E-CL1-afb-i-22-0-UI.s1 -224 35UI-H-DP0-avt-n-04-0-UI.s1 -667 24UI-H-ED0-axl-d-01-0-UI.s1 -668 29UI-HF-ET0-avx-d-19-0-UI.r1 554 56UI-E-CI0-aag-g-02-0-UI.r1 623 29UI-E-CI0-aae-h-07-0-UI.r1 371 40UI-H-DT0-avj-a-02-0-UI.s1 -433 2933329371 -264 41UI-E-CL0-abz-e-06-0-UI.s1 -201 42UI-H-ED0-ays-j-08-0-UI.s1 -675 25UI-E-CI0-aae-g-03-0-UI.r1 575 25UI-H-DP0-avt-k-02-0-UI.s1 -673 25UI-H-DP0-avr-o-12-0-UI.s1 -673 23UI-E-CI0-aaa-e-10-0-UI.r1 171 51UI-H-ED1-ayb-l-11-0-UI.s1 -215 41UI-E-CI1-afu-a-07-0-UI.r1 368 56UI-E-CI1-afq-n-08-0-UI.r1 317 56UI-E-CK0-aat-b-05-0-UI.r1 393 33UI-CF-EN1-acs-i-10-0-UI.s1 -674 25UI-H-ED0-axz-a-15-0-UI.s1 -681 25jda19d05.b1 -325 28UI-E-CL0-aca-f-07-0-UI.r1 420 37UI-HF-ET0-awg-h-05-0-UI.r1 242 51UI-H-DP0-avs-i-09-0-UI.s1 -665 29UI-H-ED0-axz-p-17-0-UI.s1 -671 2922SNP310f12.q1cSCF 388 32UI-CF-EN1-adc-b-07-0-UI.s1 -662 27UI-E-DX0-agp-e-14-0-UI.r1 620 24UI-E-CI0-aah-h-08-0-UI.r1 244 43UI-E-EO0-ahw-p-07-0-UI.s1 -676 24UI-E-CI0-aaa-a-11-0-UI.r1 334 51UI-E-CL0-abx-f-07-0-UI.r1 542 42UI-E-CL0-abv-d-10-0-UI.r1 172 39UI-E-DX0-ago-c-13-0-UI.r1 635 25UI-H-ED0-axz-l-08-0-UI.s1 -640 24UI-H-DP0-avs-i-01-0-UI.s1 -672 25UI-E-CL1-afb-i-22-0-UI.r1 578 37UI-HF-BL0-acl-c-03-0-UI.r1 228 32UI-H-ED0-aya-a-14-0-UI.s1 -676 24UI-H-ED0-axc-k-01-0-UI.s1 -672 25UI-H-ED0-aya-b-15-0-UI.s1 -676 2533329317 557 48UI-HF-BR0p-ajv-d-09-0-UI.r1 157 42UI-H-EI0-ayp-m-15-0-UI.s1 -664 24UI-HF-ET0-awh-d-12-0-UI.r1 584 46UI-E-CI1-aay-d-10-0-UI.r1 184 45UI-HF-ET0-avx-p-12-0-UI.r1 515 56UI-E-CL0-abz-a-05-0-UI.r1 574 29UI-HF-BP0p-arq-c-04-0-UI.r1 160 42UI-H-EI0-ayh-a-15-0-UI.s1 -663 25UI-E-CL0-aby-d-12-0-UI.r1 574 29UI-CF-EN1-aed-d-11-0-UI.s1 -676 24UI-H-DP0-avs-g-17-0-UI.s1 -673 25UI-H-EI0-ayd-c-02-0-UI.s1 -669 24UI-E-EO0-ahx-d-12-0-UI.r1 642 37UI-E-DW1-ahd-j-24-0-UI.r1 -175 45UI-E-DX0-agn-d-06-0-UI.r1 380 40UI-HF-ET0-awf-i-18-0-UI.r1 595 56UI-HF-ET0-avu-f-03-0-UI.r1 420 51UI-E-CL0-aby-e-06-0-UI.r1 265 45UI-H-ED0-axm-n-23-0-UI.s1 -644 23UI-E-CI0-aaj-f-11-0-UI.r1 224 45UI-H-ED0-axo-a-22-0-UI.s1 -673 23UI-HF-ET0-avu-i-12-0-UI.r1 568 56UI-CF-EN1-adi-h-09-0-UI.s1 -673 25UI-HF-ET0-avu-l-20-0-UI.r1 569 56UI-H-EI0-ayh-e-21-0-UI.s1 -673 24UI-CF-DU1-aba-o-08-0-UI.s1 296 56UI-E-CI0-aai-a-10-0-UI.r1 570 29UI-E-CI0-aae-g-01-0-UI.r1 575 25UI-E-CL1-afb-j-02-0-UI.s1 -193 42UI-HF-ET0-avw-c-05-0-UI.r1 413 56UI-CF-EN1-adi-g-03-0-UI.s1 -667 24UI-E-EO0-ahw-p-07-0-UI.r1 531 35UI-H-DP0-avq-b-14-0-UI.s1 -676 25UI-E-CL1-aff-d-18-0-UI.r1 272 41UI-H-BI0-aae-e-03-0-UI.s1 -302 42UI-E-CR1-ady-f-05-0-UI.r1 219 40UI-H-DP0-avs-p-17-0-UI.s1 -666 29UI-HF-BL0-abs-e-02-0-UI.r1 395 26UI-E-DX0-agq-a-22-0-UI.r1 311 51UI-CF-EN0-acp-k-17-0-UI.s1 -666 23UI-HF-CB0-asz-f-08-0-UI.r1 542 56UI-H-ED0-axd-f-02-0-UI.s1 -670 25UI-H-ED0-axo-n-14-0-UI.s1 -672 25UI-H-ED0-axm-k-19-0-UI.s1 -644 25UI-E-EO0-ahy-e-18-0-UI.r1 580 29UI-H-DT1-awj-e-11-0-UI.s1 -258 42UI-E-CI0-aac-a-02-0-UI.r1 619 29UI-E-CI0-aak-a-01-0-UI.r1 576 34UI-H-ED0-axz-k-04-0-UI.s1 -676 24UI-HF-ET0-awi-o-13-0-UI.r1 395 51UI-H-EI0-ayi-k-02-0-UI.s1 -677 29UI-E-DW0-agg-k-20-0-UI.r1 286 37UI-E-EO0-ahy-e-18-0-UI.s1 -670 25UI-H-BW0-ajc-d-08-0-UI.s1 -151 40UI-HF-CB0-atp-f-08-0-UI.r1 529 26UI-H-DP0-avt-h-16-0-UI.s1 -671 23UI-E-CL0-acc-h-04-0-UI.r1 207 40UI-E-CI1-afq-o-11-0-UI.s1 -215 42UI-H-ED0-axz-f-14-0-UI.s1 -674 25UI-H-ED0-axz-p-20-0-UI.s1 -678 25UI-E-DW0-agh-f-17-0-UI.r1 567 33UI-H-DP0-avt-e-20-0-UI.s1 -670 25UI-CF-EN1-adh-n-02-0-UI.s1 -666 2513S07_2-343i05.q1k -373 56UI-E-CL0-abw-h-09-0-UI.r1 661 29UI-H-ED0-aya-g-04-0-UI.s1 -671 25UI-E-EO0-ahx-d-12-0-UI.s1 -678 24UI-E-CI0-aab-c-09-0-UI.r1 576 23UI-H-EI0-ayp-d-05-0-UI.s1 -668 25UI-E-EO0-ahw-n-02-0-UI.r1 608 25UI-H-ED0-axz-o-08-0-UI.s1 -672 25UI-H-EI0-ayd-j-03-0-UI.s1 -646 24UI-H-ED0-aya-l-11-0-UI.s1 -219 41UI-H-EI0-ayl-d-08-0-UI.s1 -669 29UI-H-DP0-avt-f-01-0-UI.s1 -647 24UI-E-DW0-agm-n-19-0-UI.r1 372 40UI-H-ED0-ays-a-15-0-UI.s1 -678 23jdk25c10.g1 427 56UI-H-EI0-ayi-m-02-0-UI.s1 -658 24UI-H-FE0-bbt-k-22-0-UI.s1 -674 2413S07_2-35e08.p1k 585 37jbl34e05.g1 530 37UI-H-DT0-avk-d-02-0-UI.s1 -682 25UI-E-EO0-ahw-j-07-0-UI.r1 613 34UI-CF-EN0-acp-o-10-0-UI.s1 -671 24UI-H-EI1-ayv-j-21-0-UI.s1 -164 29UI-E-CL0-abw-c-12-0-UI.r1 200 51UI-E-CL0-acd-g-03-0-UI.r1 129 51UI-H-DP0-avt-a-06-0-UI.s1 -666 25UI-E-CL0-aby-c-04-0-UI.r1 571 23UI-HF-BN0-akt-c-02-0-UI.r1 277 42UI-E-CK0-aao-c-08-0-UI.r1 522 29UI-E-CL0-abz-e-06-0-UI.r1 618 29UI-E-CL1-afa-n-21-0-UI.s1 -250 41UI-HF-ET0-awg-a-16-0-UI.r1 600 40UI-H-EI0-ayd-k-02-0-UI.s1 -652 24UI-H-DP0-avf-l-01-0-UI.s1 -650 25UI-E-CI1-aft-i-19-0-UI.r1 604 24UI-E-CL0-aby-d-01-0-UI.r1 274 45UI-HF-BP0p-aiv-b-09-0-UI.r1 164 46UI-E-EO0-ahw-c-01-0-UI.s1 -689 24UI-H-ED0-axz-n-13-0-UI.s1 -682 29UI-H-EI0-ayl-a-14-0-UI.s1 -647 29UI-H-DP0-avr-m-06-0-UI.s1 -656 23UI-HF-BL0-adj-h-12-0-UI.r2 265 40UI-CF-EN0-aco-j-04-0-UI.s1 -680 24UI-E-CL0-acg-f-01-0-UI.r1 181 38UI-E-CL1-afa-n-21-0-UI.r1 425 42

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss35303067|allelePos=201|len=401|taxid=9606|alleles='A/G'|mol=Genomic
 CTCCTGCTTG CAACTATAGC AACAGCCTTC ATAGGCTATG TCCTCCCGTG AGGCCAAATA
 TCATTCTGAG GGGCCACAGT AATTACAAAC TTACTATCCG CCATCCCATA CATTGGGACA
 GACCTAGTTC AATGAATCTG AGGAGGCTAC TCAGTAGACA GTCCCACCCT CACACGATTC
 TTTACCTTTC ACTTCATCTT
 R
 CCCTTCATTA TTGCAGCCCT AGCAGCACTC CACCTCCTAT TCTTGCACGA AACGGGATCA
 AACAACCCCC TAGGAATCAC CTCCCATTCC GATAAAATCA CCTTCCACCC TTACTACACA
 ATCAAAGACG CCCTCGGCTT ACTTCTCTTC CTTCTCTCCT TAATGACATT AACACTATTC
 TCACCAGACC TCCTAGGCGA

  Submitted Frequency for ss35303067 back to top
There is no frequency submission for ss35303067.


  dbSNP summary of Genotypes for ss35303067 back to top
No sufficient data to compute Hardy-weinberg probability for ss35303067.


  Submitted individual genotype for ss35303067 back to top
There is no individual genotype data for ss35303067.

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