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Submitted SNP(ss) Details: ss43522101           
Submitter
HandleABI
Submitter SNP IDhCV26281522
RefSNP(rs#)rs193303001
Submitted Batch IDxplore_hum_chrU_2
Submitted DateJul 18, 2005
Publication CitedN.D.
First entry to dbSNPJul 18 2005 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodXPLORE
Ascertainment Samplesize10
PopulationCelera_Donors
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginG:Germline A:Germline
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 10
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss43522101|allelePos=301|len=601|taxid=9606|alleles='A/G'|mol=Genomic
 GCCCTATTAC TATCCATCCT CATCCTAGCA ATAATCCCCA TCCTCCATAT ATCCAAACAA
 CAAAGCATAA TATTTCGCCC ACTAAGCCAA TCACTTTATT GACTCCTAGC CGCAGACCTC
 CTCATTCTAA CCTGAATCGG AGGACAACCA GTAAGCTACC CTTTTACCAT CATTGGACAA
 GTAGCATCCG TACTATACTT CACAACAATC CTAATCCTAA TACCAACTAT CTCCCTATTG
 AAAACAAAAT ACTCAAATGG GCCTGTCCTT GTAGTATAAA CTAATACACC AGTCTTGTAA
 R
 CCGGAGATGA AAACCTTTTT CCAAGGACAA ATCAGAGAAA AAGTCTTTAA CTCCACCATT
 AGCACCCAAA GCTAAGATTC TAATTTAAAC TATTCTCTGT TCTTTCATGG GGAAGCAGAT
 TTGGGTACCA CCCAAGTATT GACTCACCCA TCAACAACCG CTATGTATTT CGTACATTAC
 TGCCAGTCAC CATGAATATT GTACGGTACC ATAAATACTT GACCACCTGT AGTACATAAA
 AACCCAATCC ACATCAAAAC CCCCTCCCCA TGCTTACAAG CAAGTACAGC AATCAACCTT

  Submitted Frequency for ss43522101 back to top
There is no frequency submission for ss43522101.


  dbSNP summary of Genotypes for ss43522101 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU226226A=0.98230088
G=0.01769911A/A=0.98230088
G/G=0.01769911
Pr(chiSq=109.071,df=1)
=0.001
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686A=0.97674417
G=0.02325581A/A=0.97674417
G/G=0.02325581
Pr(chiSq=41.047,df=1)
=0.001
Genotype
Freq.
HapMap-JPT172172A=0.97674417
G=0.02325581A/A=0.97674417
G/G=0.02325581
Pr(chiSq=82.093,df=1)
=0.001
Genotype
Freq.
HapMap-YRI226226A=0.97345132
G=0.02654867A/A=0.97345132
G/G=0.02654867
Pr(chiSq=107.159,df=1)
=0.001
Genotype
Freq.
HAPMAP-ASW9898A=0.97959185
G=0.02040816A/A=0.97959185
G/G=0.02040816
Pr(chiSq=47.041,df=1)
=0.001
Genotype
Freq.
HAPMAP-CHB8282A=0.97560978
G=0.02439024A/A=0.97560978
G/G=0.02439024
Pr(chiSq=39.049,df=1)
=0.001
Genotype
Freq.
HAPMAP-CHD170170A=0.98823529
G=0.01176471A/A=0.98823529
G/G=0.01176471
Pr(chiSq=83.024,df=1)
=0.001
Genotype
Freq.
HAPMAP-GIH176176A=0.98863637
G=0.01136364A/A=0.98863637
G/G=0.01136364
Pr(chiSq=86.023,df=1)
=0.001
Genotype
Freq.
HAPMAP-LWK180180A=0.98888886
G=0.01111111A/A=0.98888886
G/G=0.01111111
Pr(chiSq=88.022,df=1)
=0.001
Genotype
Freq.
HAPMAP-TSI176176A=0.93181819
G=0.06818182A/A=0.93181819
G/G=0.06818182
Pr(chiSq=76.818,df=1)
=0.001
Genotype
Freq.

  Submitted individual genotype for ss43522101 back to top
There is no individual genotype data for ss43522101.

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