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Submitted SNP(ss) Details: ss76901821           
Submitter
HandleUUGC
Submitter SNP IDCHRNA2_61311
RefSNP(rs#)rs56298562
Submitted Batch IDUUGC_NICOTINIC
Submitted DateOct 01, 2007
Publication Cited[1] Polymorphism Discovery on 10 Cholinergic Nicotinic Receptor Genes
First entry to dbSNPOct 1 2007 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodGAP_SEQUENCE
Ascertainment Samplesize384
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginT:Germline C:Germline
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Homozygote DetectedY
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss76901821|allelePos=502|len=1003|taxid=9606|alleles='C/T'|mol=Genomic
 CCCTGCCTGC TCATCTCCTG CCTCACTGTG CTGGTCTTCT ACCTGCCCTC CGACTGCGGC
 GAGAAGATCA CGCTGTGCAT TTCGGTGCTG CTGTCACTCA CCGTCTTCCT GCTGCTCATC
 ACTGAGATCA TCCCGTCCAC CTCGCTGGTC ATCCCGCTCA TCGGCGAGTA CCTGCTGTTC
 ACCATGATCT TCGTCACCCT GTCCATCGTC ATCACCGTCT TCGTGCTCAA TGTGCACCAC
 CGCTCC
 CCCAGCACCC ACACCATGCC CCACTGGGTG CGGGGGGCCC TTCTGGGCTG TGTGCCCCGG
 TGGCTTCTGA TGAACCGGCC CCCACCACCC GTGGAGCTCT GCCACCCCCT ACGCCTGAAG
 CTCAGCCCCT CTTATCACTG GCTGGAGAGC AACGTGGATG CCGAGGAGAG GGAGGTGGTG
 GTGGAGGAGG AGGACAGATG GGCATGTGCA GGTCATGTGG CCCCCTCTGT GGGCACCCTC
 TGCAGCCACG GCCAC
 Y
 TGCACTCTGG GGCCTCAGGT CCCAAGGCTG AGGCTCTGCT GCAGGAGGGT GAGCTGCTGC
 TATCACCCCA CATGCAGAAG GCACTGGAAG GTGTGCACTA CATTGCCGAC CACCTGCGGT
 CTGAGGATGC TGACTCTTCG GTGCGTTGGG GTTGGGAGAG GCGCCAGCCT GGGTGGCCCC
 ACCAACTTAG CGGGGAACCA CCTTACCGCA GAGTGTGAGC TTGGGCAGCC CAGGCCCCTC
 TCGTGAAGGC CCACT
 TTCCTCAGTC ATGGTCCTTA GATGGAATAA ATAGCAAGAG AGCACATGTA GCTGGCCGCT
 TTGAGGACGT TTATTGGCAC GTGGCATGTT ACACACCACG GAGTCAGGCA TGAGCAGCTC
 AGCCTAACAG GGATCCTGAG AGCCGGAGAG GGAGGATCCC AGATGCTGAA CCCCGTGCCT
 CCCTCACGCC GCCAGCTCCC ACCATTGCCT TGGAGGTGGC GGCAGGCAGG GGGAGCATTT
 CAGGAG

  Submitted Frequency for ss76901821 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
GAP
EUROPE
382C=0.97640002
T=0.02360000
UUGC_NITOTINICUUGC


  dbSNP summary of Genotypes for ss76901821 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
GAP
EUROPE
382382C=0.97643977
T=0.02356021C/C=0.95811516
C/T=0.03664922
T/T=0.00523560
Pr(chiSq=7.906,df=1)
=0.005
Genotype
Freq.

  Submitted individual genotype for ss76901821 back to top
There is no individual genotype data for ss76901821.