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Submitted SNP(ss) Details: ss9903423           
Submitter
HandleBCM_SSAHASNP
Submitter SNP IDchr1.NT_028050.12_932706
RefSNP(rs#)rs6702910
Submitted Batch IDBaylor-WGS-200306-1
Submitted DateJun 27, 2003
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJun 27 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodBAYLOR-WGS-200306
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 5
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:50791805position:-397quality:43

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss9903423|allelePos=851|len=1051|taxid=9606|alleles='C/T'|mol=Genomic
 ACATACCAAT AATCATAATT AATGTAAATA CATTAAACCA GCCATTAAAT AACAGATATC
 ATCAAGAAAA AAATATATAT ATGTGCAGTT TTAAAAAACA CATTAAAAGT ATACAGAAAG
 TTTGAAGATA ATGGGCTAAA AAAGATGTAT CATAAGAATA CTAACCCAAG AAAGCTCATG
 tttcaaacaa gaaatatttt aaagggaaat aactacaaga aaaacggtgg gcacaaataa
 taaaaaagag cattccacta agttacaata ataaacacat atacatctaa caatttggcc
 tcaaatttat aaagctaaaa ctaatagaat aatgagaact aaacaaaata acaatgacag
 tggacaattt ttaaatacct ctatcaGAAA CATATCAAGC AGAAAAAGAA ACTGAGATTT
 AGAAAACTGA ggctgggcac agtggctcat gcctgtaatc ccagcatttt gagaggctga
 ggcagacaga ttgcttaagt ttaggagttt gaggccagtc tgggcaacat ggaaaaaacc
 tacctctaca aaagatacaa aagttagctg ggcatggtgg catgcacctg tagccccagc
 tacttggggg gctgaggtga gaggatctct tgagcctggg aggtcaaggc tacagtgagc
 catgattgca cccctgtact ccagcctggg caacagagca agaccctgtc tcaaaaaaag
 aaaaaagaaa aTTCAGACAA CATATTTTGA CAAGATTAAT CCaatAGAGA TAAATAGAAT
 CCTGCACCTC ACAAATAGAG AACATTTTTA TGCATATATG AAGCATTTGC AGAACAAATT
 CCATAAGATA
 Y
 TTTATTAACC TAAGAAAGTA CATGCTAAAA CTACTATATG CCTGGCCATT ATCTAAAGAG
 AAGAGAGTTC TTAAGAAGAG GTGGTTAGAG GGAAAACAGA GGTGAAAGAA ATATATTCTA
 GTTTATTTAG TTGGCAATTA CTTGTGGGGC ATCTAGTATG TTCCATTCTC CCAACTGGTC
 TTATAAAAAG TATCCCGCAT

  Submitted Frequency for ss9903423 back to top
There is no frequency submission for ss9903423.


  dbSNP summary of Genotypes for ss9903423 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU110110T=0.56363636
C=0.43636364C/T=0.54545456
T/T=0.29090908
C/C=0.16363636
Pr(chiSq=0.652,df=1)
=0.439
Genotype
Freq.
HapMap-HCB
EAST ASIA
8282C=0.75609756
T=0.24390244C/C=0.65853661
C/T=0.19512194
T/T=0.14634146
Pr(chiSq=9.094,df=1)
=0.005
Genotype
Freq.
HapMap-JPT8080C=0.67500001
T=0.32499999C/T=0.50000000
C/C=0.42500001
T/T=0.07500000
Pr(chiSq=0.780,df=1)
=0.403
Genotype
Freq.
HapMap-YRI104104C=0.69230771
T=0.30769232C/C=0.48076922
C/T=0.42307693
T/T=0.09615385
Pr(chiSq=0.003,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss9903423 back to top
There is no individual genotype data for ss9903423.

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