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Submitted SNP(ss) Details: ss1038075           
Submitter
HandleKWOK
Submitter SNP IDOVLP-000804-509914
RefSNP(rs#)rs701848
Submitted Batch IDOVLP-000804-3
Submitted DateSep 02, 2000
Publication Cited[1] A general approach to single-nucleotide polymorphism discovery
[2] Overlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
First entry to dbSNPSep 2 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodOverlapSnpDetectionWithPolyBayes
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 4
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
For parameters, see batch record.SNP-specific information (for explanation, see method record). SequenceLocalName1:AF067844 SequenceAccession1:AF067844 SequenceVersion1:1 SequenceContigName1:Contig1 SequenceContigPosition1:124956 SequenceLocalName2:AL356142 SequenceAccession2:AL356142 SequenceVersion2:4 SequenceContigName2:Contig8 SequenceContigPosition2:4023 PolyBayesConfidence:97

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss1038075|allelePos=133|len=233|taxid=9606|alleles='T/C'|mol=Genomic
 TAGAAATTGT CCTACATGTG CTTTATTGAT TTGCTATTGA AAGAATAGGG tttttttttt
 tttttttttt ttttttAAAT GTGCAGTGTT GAATCATTTC TTCATAGTGC TCCCCCGAGT
 TGGGACTAGG GC
 Y
 TCAATTTCAC TTCTTAAAAA AAATCATCAT ATATTTGATA TGCCCAGACT GCATACGATT
 TTAAGCGGAG TACAACTACT ATTGTAAAGC TAATGTGAAG

  Submitted Frequency for ss1038075 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
SC_95_C
NORTH AMERICA
178T=0.51999998
C=0.47999999
0.499 +/-0.004TSC-SANGER-SC_95_C-Sep-21-2003-ALLELE_FREQUENCYTSC-CSHL
SC_12_C
NORTH AMERICA
24C=0.54000002
T=0.46000001
0.497 +/-0.023TSC-SANGER-SC_12_C-Sep-21-2003-ALLELE_FREQUENCYTSC-CSHL
SC_12_AA
NORTH AMERICA
24T=0.79000002
C=0.20999999
0.332 +/-0.136TSC-SANGER-SC_12_AA-Sep-21-2003-ALLELE_FREQUENCYTSC-CSHL
SC_12_A
EAST ASIA
22C=0.55000001
T=0.46000001
0.486 +/-0TSC-SANGER-SC_12_A-Sep-21-2003-ALLELE_FREQUENCYTSC-CSHL


  dbSNP summary of Genotypes for ss1038075 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
SC_12_A
EAST ASIA
2222C=0.54545456
T=0.45454547C/T=0.54545456
C/C=0.27272728
T/T=0.18181819
Pr(chiSq=0.110,df=1)
=0.752
Genotype
Freq.
SC_12_AA
NORTH AMERICA
2424T=0.79166669
C=0.20833333T/T=0.66666669
C/T=0.25000000
C/C=0.08333334
Pr(chiSq=0.703,df=1)
=0.403
Genotype
Freq.
SC_95_C
NORTH AMERICA
8888T=0.54545456
C=0.45454547C/T=0.45454547
T/T=0.31818181
C/C=0.22727273
Pr(chiSq=0.306,df=1)
=0.584
Genotype
Freq.

  Submitted individual genotype for ss1038075 back to top
There is no individual genotype data for ss1038075.