Submitted SNP(ss) Details: ss105436879

Submitted SNP(ss) Details: ss105436879

Submitter
Handle	SNP500CANCER
Submitter SNP ID	PIK3CA-63
RefSNP(rs#)	rs2699895
Submitted Batch ID	SNP500CANCER_07_03_08_A
Submitted Date	Sep 05, 2008
Publication Cited	N.D.
First entry to dbSNP	Sep 5 2008 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	PIK3CA-63

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SEQUENCING
Ascertainment Samplesize	202
Population	N.D.

Allele
Observed Allele	A/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 TATAATGTTT AATTTTTTAT CACCTTTGCA GATTAATATG NNNNTAGNTC ATAATACTCT
 GACATGTTAC TTTTAAAATG AAAAACCTTA CAGGAAATGG CTYGCCCCCT TAATCTCTTA
 CAGTATATAA GAAGCTGTAT AATGCTTGGG AGGATGCCCA ATTTGATGTT GATGGCTAAA
 GAAAGCCTTT ATTCTCAACT GCCAATGGAC TGTTTTACAA TGCCATCTTA TTCCAGACGC
 ATTTCCACAG CTACACCATA TATGAATGGA GAAACATCTA CAAAATCCCT TTGGGTTATA
 AATAGWGCAC TCAGAATAAA AATTCTTTGT GCAACCTACG TGAAWSTAAA TATTCGAGAC
 ATTGAYAAGG TAAAGTCAAA TGCTGATGCT TATTATTTTA TAGAAATTAT TTTAGATAAC
 CTTTTTCTTG
 M
 ACTATACAGT AATCTGTTGA CCTGTAGTAT GTTTTCAGAT GGTTAGGAGA ACATCCAAAT
 CTCCGAATGT AAAAATATAT CAAGAATTTT ACTTGAGCTT CCATCTAMCT TAGCTANNNN
 TTATACAGCT CACAGTCCTT TGTTAATAAT TCTAATATTC ACAATTCTAG CTCTTAAAA

Submitted Frequency for ss105436879

Population ID -Class	Sample (2n)	Genotype Freq.	Submission Batch	Submitter
PAC1 - MULTI-NATIONAL	48	C/C=0.66666698 A/C=0.29166701 A/A=0.04166700	SNP500CANCER_07_03_08_A	SNP500CANCER
P1 - MULTI-NATIONAL	204	A/C=0.38235301 A/A=0.33333299 C/C=0.27451000 N/N=0.00980400	SNP500CANCER_07_03_08_A	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	A/C=0.45161301 A/A=0.38709700 C/C=0.12903200 N/N=0.03225800	SNP500CANCER_07_03_08_A	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	A/A=0.50000000 A/C=0.37500000 C/C=0.12500000	SNP500CANCER_07_03_08_A	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	A/A=0.39130399 A/C=0.39130399 C/C=0.21739100	SNP500CANCER_07_03_08_A	SNP500CANCER

dbSNP summary of Genotypes for ss105436879

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
P1 - MULTI-NATIONAL	202	202	A=0.52970296	C=0.47029704	A/C=0.38613862 A/A=0.33663365 C/C=0.27722773	Pr(chiSq=5.113,df=1) =0.025	Genotype Freq.
CAUC1 - MULTI-NATIONAL	60	60	A=0.63333333	C=0.36666667	A/C=0.46666667 A/A=0.40000001 C/C=0.13333334	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
AFR1 - MULTI-NATIONAL	48	48	A=0.68750000	C=0.31250000	A/A=0.50000000 A/C=0.37500000 C/C=0.12500000	Pr(chiSq=0.389,df=1) =0.584	Genotype Freq.
HISP1 - MULTI-NATIONAL	46	46	A=0.58695650	C=0.41304347	A/C=0.39130434 A/A=0.39130434 C/C=0.21739130	Pr(chiSq=0.857,df=1) =0.371	Genotype Freq.
PAC1 - MULTI-NATIONAL	48	48	C=0.81250000	A=0.18750000	C/C=0.66666669 A/C=0.29166666 A/A=0.04166667	Pr(chiSq=0.044,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss105436879

There is no individual genotype data for ss105436879.

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