Submitted SNP(ss) Details: ss105437190

Submitted SNP(ss) Details: ss105437190

Submitter
Handle	SNP500CANCER
Submitter SNP ID	KIT-19
RefSNP(rs#)	rs3733542
Submitted Batch ID	SNP500CANCER_07_03_08_A
Submitted Date	Sep 05, 2008
Publication Cited	N.D.
First entry to dbSNP	Sep 5 2008 12:00:00:000AM

Resource Links
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	KIT-19

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SEQUENCING
Ascertainment Samplesize	200
Population	N.D.

Allele
Observed Allele	C/G
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 GGGATAATGC ACTTGTGAGC CATGTATTTC AGAGGTGATT GGGATCATCT GAGTTCATAT
 AGGTAAAAGG TTTTTGTGAG ATGGTACTCA AGTTATCACT CCACATTTCA GCAACAGCAG
 CATCTATAAG AATATCTTCT GTTCAATTTT GTTGAGCTTC TGAATTAACA TTATTGACTC
 TGTTGTGCTT CTATTACAGG CTCGACTACC TGTGAAGTGG ATGGCACCTG AAAGCATTTT
 CAACTGTGTA TACACGTTTG AAAGTGACGT CTGGTCCTAT GGGATTTTTC TTTGGGAGCT
 S
 TTCTCTTTAG GTAAAATGAT CCTTGCCAAA GACAACTTCA TTAGACTCAG AGCATCTTCT
 TGAAGTTTCA TTGGTGTCCT GCTTCCTTGT GATTAACACT GCTTTGCAAA CTGTGTCTCA
 GGAAGCAGCC CCTATCCTGG AATGCCGGTC GATTCTAAGT TCTACAAGAT GATCAAGGAA
 GGCTTCCGGA TGCTCAGCCC TGAACACGCA CCTGCTGAAA TGTAAGAGCC AAAAAATTTT
 TCCTTTAGGT CACGTTTTCC CTTTTATTTT TCTTTTTAGA GACAGAAACC CAGATGTTGA

Submitted Frequency for ss105437190

Population ID -Class	Sample (2n)	Genotype Freq.	Submission Batch	Submitter
AFR1 - MULTI-NATIONAL	48	G/G=0.58333302 C/G=0.25000000 C/C=0.16666700	SNP500CANCER_07_03_08_A	SNP500CANCER
P1 - MULTI-NATIONAL	204	G/G=0.70588201 C/G=0.20588200 C/C=0.06862700 N/N=0.01960800	SNP500CANCER_07_03_08_A	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	G/G=0.78260899 C/G=0.13043500 C/C=0.04347800 N/N=0.04347800	SNP500CANCER_07_03_08_A	SNP500CANCER
CAUC1 - MULTI-NATIONAL	62	G/G=0.74193501 C/G=0.22580600 N/N=0.03225800	SNP500CANCER_07_03_08_A	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	G/G=0.70833302 C/G=0.20833300 C/C=0.08333300	SNP500CANCER_07_03_08_A	SNP500CANCER

dbSNP summary of Genotypes for ss105437190

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
P1 - MULTI-NATIONAL	200	200	G=0.82499999	C=0.17500000	G/G=0.72000003 C/G=0.20999999 C/C=0.07000000	Pr(chiSq=7.438,df=1) =0.010	Genotype Freq.
CAUC1 - MULTI-NATIONAL	60	60	G=0.88333333	C=0.11666667	G/G=0.76666665 C/G=0.23333333	Pr(chiSq=0.115,df=1) =0.752	Genotype Freq.
AFR1 - MULTI-NATIONAL	48	48	G=0.70833331	C=0.29166666	G/G=0.58333331 C/G=0.25000000 C/C=0.16666667	Pr(chiSq=3.744,df=1) =0.100	Genotype Freq.
HISP1 - MULTI-NATIONAL	44	44	G=0.88636363	C=0.11363637	G/G=0.81818181 C/G=0.13636364 C/C=0.04545455	Pr(chiSq=2.296,df=1) =0.150	Genotype Freq.
PAC1 - MULTI-NATIONAL	48	48	G=0.81250000	C=0.18750000	G/G=0.70833331 C/G=0.20833333 C/C=0.08333334	Pr(chiSq=2.400,df=1) =0.150	Genotype Freq.

Submitted individual genotype for ss105437190

There is no individual genotype data for ss105437190.

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