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Submitted SNP(ss) Details: ss10599835           
Submitter
HandleBCM_SSAHASNP
Submitter SNP IDchr10.NT_077569.2_678748
RefSNP(rs#)rs2000175
Submitted Batch IDBaylor-WGS-200306-2
Submitted DateJun 29, 2003
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJun 29 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodBAYLOR-WGS-200306
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:55021604position:290quality:27

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss10599835|allelePos=521|len=1863|taxid=9606|alleles='C/G'|mol=Genomic
 AAGCGTTGCC TTCCCGAGAA CGCCTGCTCT TTAAGGGATC CCCGCCGCCA TGCAACCTAC
 AATCGCACGG CCCTTTACAG TGTATAAAGC CCTTCAAACC TTGAGGGGGC TGTCGGGAAA
 CCTGTGTTCT GTTGACAGTT CTGTCAGTCA CTCTGGGCTT GAGGGTTCTC TAAGGAAAGC
 ATGGAGATTG GACTGGAGTA tgttaaggac tgaattgcat ccctgccaaa aacagcacgt
 tggagtccta ctcgccagca cctcagggtg tgaccttatt tggagaaaag tctttccaga
 ggccatcaag ttaaaatgag gtcattagga tgggccttaa tccagtatgg ctgatgtcct
 tataaaaaag ggaaatttgg agacaggcac atgcagagag aaggtgatga gaagagggag
 tgaagacagc tgactacagg tcaaggacag acacctggat agctccttcc cgcagcctca
 aaggacccag tcctgccgac accttgatct tggactccca
 S
 cttccagaat caggagaaaa taaatttttg ttgtgggccg gtgcgacagc tcattcccat
 aatctcagca ctttgggaag ctgaggcagg aggatcactt gagcccagga gactgagacc
 agcctgggca gcatggggag acctgtctct acaaaaaata aaatagctga gcctggtggc
 acttacctgt ggtcccagtt agttggaagg ctgaagggga agaccgcttg agcccaggag
 gtcaaggctg cagtgggcta tgattgcagc actgtactcc agcctaggtg acagagcgag
 atcctatctc taaaaaaaaa aaaaattaaa aaactgttgt gtaagtccct ccatctgaag
 tactttgttg cgacatcctc agcacactaa tacaGTGTAC TGAAGCTTTT TTGTGTGTGC
 TGTAGCCCCT CTGGTCCTCC AGGGTTGATC CTGAGCCCCT TCTTAGAATA ATGTTTACAT
 TTAAAAAATA ACACACTTTG GATTacgAAG GAGAGAACTC ttgaaatact gatatcaaaa
 tgccaaatat aaacatttac gatgtagaaa tatatgtacc actttaataa tgcattcaat
 agtggcaagt ctgaaaacaa ccgtaatttc acagtagaga tgaagggtaa atactctttc
 aagacatctg caacaggctg ggtgtggtgg ctcatgcctg taaccccagc actttgggag
 gctgatgtag gagaattgct taagcccgga agtttgagac tagccagggc aacatagtga
 gaccccatct aaaaagaatt agctgggtgt ggtggcacac gcctatagtc cgagcaactt
 ggaggctgag gtgggaggat ccctcgagcc cgggtggtcg aggttgcagt gagctgtgat
 ggtaccactg cactccaggt tgggtgacag agccagactc tgtctcaaaa aaaaaacaaa
 aaacaaaact gcaataacca tcatgtgcca tgaacatatt atgattttta ctggtgaccg
 acacagaggc tgctcatgtg gtatgctgcc tatcttcata atgaaaatgc taaatattag
 ttcctggcta gtggaggaaa agattttttt tcccacccaa gtttacatat tcttgaattt
 gatcTGTTCC TGGACTGGGT GGTGTCCACT AGGGGACTTT TGGGGTCTGT GGTTAGGCGA
 CTCTGGGTGG ATTGTCCCAT GAGGCTGATG CCTCTTGCTC TTTGCTTAAG ACTCAGTGAC
 CCTTCGGCAC TTGGGGGCCT TGTGCCAGGG GCAGGTGGTC ACGGCCCCGC CCCTCTGTTG
 TCATGGCGAC AAACCGATGT GG

  Submitted Frequency for ss10599835 back to top
There is no frequency submission for ss10599835.


  dbSNP summary of Genotypes for ss10599835 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-HCB
- EAST ASIA 		8888G=0.81818181
C=0.18181819G/G=0.68181819
C/G=0.27272728
C/C=0.04545455
Pr(chiSq=0.306,df=1)
=0.584		Genotype
Freq.
HapMap-JPT8686G=0.81395346
C=0.18604651G/G=0.67441863
C/G=0.27906978
C/C=0.04651163
Pr(chiSq=0.265,df=1)
=0.655		Genotype
Freq.
HapMap-YRI118118G=0.83898306
C=0.16101696G/G=0.67796612
C/G=0.32203391
Pr(chiSq=0.643,df=1)
=0.439		Genotype
Freq.

  Submitted individual genotype for ss10599835 back to top
There is no individual genotype data for ss10599835.

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