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Submitted SNP(ss) Details: ss107075           
Submitter
HandleTSC-CSHL
Submitter SNP IDTSC0142920
RefSNP(rs#)rs753646
Submitted Batch IDTSC-SANGER-19-25-000905-RESUBMISSION
Submitted DateSep 06, 2000
Publication CitedN.D.
First entry to dbSNPSep 6 2000 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTSC-SANGER-19-25
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral Allele
Allele OriginN/A
SNP ClassSNV
CpG CodenonCpG
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency Submissionpopulation count: 1
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss107075|allelePos=55|len=832|taxid=9606|alleles='C/T'|mol=Genomic
 TGTCCAGGAA TGCATGGAGT TGGTCAGGGA GGCTCTGCCA TGCCCAATAG CTAG
 Y
 TGGCTTTCTC CAGCTCTCCT TCTGAAACCT GGCCAAGCCC CCTACCCCTT ACTCAGCCCA
 TTGACTCTTA AGCTCTCACT GGAGTGAGGT GGGATAGCCA GGagagtgtg caatgtggag
 acactgcaga tctaagtttg aatcctagtt ctgtttctta ctagacattt aacttgaata
 agtccctttg acatgcctcc tttttctcat ctatTCTTTG GAAAGCTTTT TTTCTttttt
 cttttttttt tacagaaatg ggagtctcgc catgttgccc aggttggtct tgaactcttg
 agctcaagca atccacctgc cttggcctcc caaagtgctg ggattatagg catgagccac
 tgtgcccagc cCTTTTTTTC TTTTTTAAAC ATTTTTCTAC CCCCCAAAAT GCAGAAAAAT
 CATTTGGATT CCTATCCGTC CCCTTCACAA TTGGGCTCTT TTTAAAATTC TATTTCAACT
 CTGTCCTGGA GCCTGTTCAC CTAGAGGAAG CCCCTACACC TTTCCTTCCA AACCCCCTTG
 TAGAAGTGTG TAAGTGACTA ACATGTTCCA ACTTCCCAGG AAGGGGCAGA GTCATCATGC
 TCACCCTTGT ACCAACATGT GGGTTTCCGC ATCACTCTGT CCAAGACCAC AAACTCTGGG
 GAGTGTGTTC ACTTGCCCAG CTTGGCTTCA CACCCACCCT TGGCTAGTAA GGAAACAGAA
 TCTCGTGACT AGAGTGTCAA GACTGTCTAC ACAGGGGAAA GAAGTTATTC TTCAAAA

  Submitted Frequency for ss107075 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
CEPH
MULTI-NATIONAL
184C=0.75000000
T=0.25000000
0.375 +/-0.0451_2004SEQUENOM


  dbSNP summary of Genotypes for ss107075 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU120120C=0.51666665
T=0.48333332C/T=0.50000000
C/C=0.26666668
T/T=0.23333333
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
9090T=0.92222220
C=0.07777778T/T=0.84444445
C/T=0.15555556
Pr(chiSq=0.048,df=1)
=1.000
Genotype
Freq.
HapMap-JPT8888T=0.84090906
C=0.15909091T/T=0.68181819
C/T=0.31818181
Pr(chiSq=0.461,df=1)
=0.527
Genotype
Freq.
HapMap-YRI120120C=0.66666669
T=0.33333334C/C=0.46666667
C/T=0.40000001
T/T=0.13333334
Pr(chiSq=0.600,df=1)
=0.479
Genotype
Freq.

  Submitted individual genotype for ss107075 back to top
There is no individual genotype data for ss107075.

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