NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss107942598           
Submitter
Handle1000GENOMES
Submitter SNP IDCEU.trio.12.15.2008_1646_chr1_2503076
RefSNP(rs#)rs734999
Submitted Batch IDpilot_2_CEU_trio_final_release
Submitted DateMar 29, 2010
Publication CitedN.D.
First entry to dbSNPDec 15 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTRIO_CONSENSUS_CALLS
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:143

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss107942598|allelePos=201|len=401|taxid=9606|alleles='C/T'|mol=Genomic
 GATCTCTGGA TGGAGAATTC CACAGCTGAT TGGAACCTAA ACGAGAGAAC CAAATGGACA
 TCCCAGGGCT GCAGGTCAGT GTCATGAGAC GGGTGATGGC AGACTGGACC CCGTGGCAGG
 TGGACCATGG AGGGGAGACA GAGACAGGGC AACAGAAACG GTGCAAACAG CCACTGAAAT
 ACCCGTGGGA AAGAAAAGCA
 Y
 AACAGAGAAC AGGAGACTTA TGTGACTCCG ACTCAACAAG ACGCATTAGT TAAAAGATCT
 AATATATGCG TATGGGGCTT CCCAGAATAA GAGGAAGGAA GGAAGGAAAG AATGAGACAT
 CATAAGATAG TGTTAAAAAA AAAAGAATTC CCAGCCGGGC ACGCTGGCTC ACGCCTGTAA
 TCTCAGCACT TTGGAAGGCC

  Submitted Frequency for ss107942598 back to top
There is no frequency submission for ss107942598.


  dbSNP summary of Genotypes for ss107942598 back to top
No sufficient data to compute Hardy-weinberg probability for ss107942598.


  Submitted individual genotype for ss107942598 back to top
There is no individual genotype data for ss107942598.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement