NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss108047569           
Submitter
Handle1000GENOMES
Submitter SNP IDCEU.trio.12.15.2008_27640_chr1_20866804
RefSNP(rs#)rs647812
Submitted Batch IDpilot_2_CEU_trio_final_release
Submitted DateMar 29, 2010
Publication CitedN.D.
First entry to dbSNPDec 15 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTRIO_CONSENSUS_CALLS
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:119

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss108047569|allelePos=201|len=401|taxid=9606|alleles='T/C'|mol=Genomic
 CCCCCACCCC GTCCTGACCT GTGGAAAAAT TGTCTTCCAC GAAACTGGTC CCTGGTGCCA
 AAAAGACTGG GGACAGTTGC TTTAACAGAC CAGGCCTCTC TTCCTTTTGG ATCACCAATG
 GCCAGCAGCC ATCCTTCCGG CCATGTGGAG AAAGCCTTCA GTTAGCATAC CAAGGGAAGC
 AGGAACAAGA GGTGAAGACA
 Y
 AGGCCAGGAG CAGTGGCTCA CGCCTGTAAT CCCAGCACTT TGGGAGGCCA AGGCAGGCGG
 ATCACCTGAG GCCAGGAGTT CAAGACCAGC CTGACCAACA TGGAGAAACC CTGTCTCTAC
 TAAAAATGCA AAAAAATTAG CTGGACGTCG TGGTGCATGC CTGTAATCCC AGCTACTCTG
 GAGGCTGAGG CAAGAGGATC

  Submitted Frequency for ss108047569 back to top
There is no frequency submission for ss108047569.


  dbSNP summary of Genotypes for ss108047569 back to top
No sufficient data to compute Hardy-weinberg probability for ss108047569.


  Submitted individual genotype for ss108047569 back to top
There is no individual genotype data for ss108047569.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement