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Submitted SNP(ss) Details: ss108338188           
Submitter
Handle1000GENOMES
Submitter SNP IDCEU.trio.12.15.2008_98490_chr1_79174842
RefSNP(rs#)rs1489396
Submitted Batch IDpilot_2_CEU_trio_final_release
Submitted DateMar 29, 2010
Publication CitedN.D.
First entry to dbSNPDec 15 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTRIO_CONSENSUS_CALLS
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:111

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss108338188|allelePos=201|len=401|taxid=9606|alleles='G/A'|mol=Genomic
 ATATGTTTCA TGTTATATGA ATCAAAAAAG AAAACTTTGA GAGCTGAAAC AAAACCATGA
 AAATAAAAAA AGTGAAATTA CTTTAATCAA TATACATCAT AAATATATTA GCTTAGAGAC
 AATTTCATCC ATCATTATTG TGTTTTAAAT TATTTATAAC AAGTAGAGTG AACATTCTTA
 ATGTGTTTGG ACAATGTAAT
 R
 TATATGTTAA AAATCTGACT CAAGTTTTAA TTTTTTAATT TCACTATGGC ACTCATGGTT
 TAACTTTTTT TGCATTAAAT AAAATATAAT ATGTGTATGT AACCAAGCAA GCTATAAAAT
 TATAATTACT AAAGCAAAGA TAAGCAACTA CAATGGCTTA CAGAATAGTG TCTACAACTT
 ACTAATGAGT GATTTAATTA

  Submitted Frequency for ss108338188 back to top
There is no frequency submission for ss108338188.


  dbSNP summary of Genotypes for ss108338188 back to top
No sufficient data to compute Hardy-weinberg probability for ss108338188.


  Submitted individual genotype for ss108338188 back to top
There is no individual genotype data for ss108338188.