NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss108504620           
Submitter
Handle1000GENOMES
Submitter SNP IDCEU.trio.12.15.2008_139209_chr1_107853380
RefSNP(rs#)rs12021511
Submitted Batch IDpilot_2_CEU_trio_final_release
Submitted DateMar 29, 2010
Publication CitedN.D.
First entry to dbSNPDec 15 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTRIO_CONSENSUS_CALLS
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:138

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss108504620|allelePos=201|len=401|taxid=9606|alleles='G/A'|mol=Genomic
 TTTCAAAATA GCTAGAAGAG AGAACTTGAA ATGTTACCAA CACATAGTAA TGATAAATAC
 TTGAGGTGAT GGACACCTCA AATATCCTGA CTTAATTATT ACACAGTCTA TGCATGTAAG
 AAAATATCAC ATATATCCCA TACATACGTA CAAATATTTG TATCAATAAA AATAACTTGA
 ATGGATAAGT TACTTCTTAC
 R
 GATGAAAAAA AGTTGTTCTT GAGATGAAAT CTACTCCCAG TGAAGATACT GTGAACATTG
 TTGAAGTGAC ACCAAAGGAC TTAGAATATT ACATAAACTT CATCGATAAA ACAAAAGCAG
 GGTTTGAGAG GATTGATTTT AATTTTGAAA GAAGTTCTAC TGTATGTAAA GTGCTATCAA
 ATAGTATCAC ACACAACAGA

  Submitted Frequency for ss108504620 back to top
There is no frequency submission for ss108504620.


  dbSNP summary of Genotypes for ss108504620 back to top
No sufficient data to compute Hardy-weinberg probability for ss108504620.


  Submitted individual genotype for ss108504620 back to top
There is no individual genotype data for ss108504620.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement