NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss108824238           
Submitter
Handle1000GENOMES
Submitter SNP IDCEU.trio.12.15.2008_217085_chr1_192760817
RefSNP(rs#)rs2494124
Submitted Batch IDpilot_2_CEU_trio_final_release
Submitted DateMar 29, 2010
Publication CitedN.D.
First entry to dbSNPDec 16 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTRIO_CONSENSUS_CALLS
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:79

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss108824238|allelePos=201|len=401|taxid=9606|alleles='G/A'|mol=Genomic
 GATACCATAT GTGTATATAT TTAGTTATAT ATATATACAC ACACTCACAC ACTCACACAC
 ACATACATAT ACACATATAT AAGTGTGTAT ATACATATGT GTGTCTGTAG AGGGAGCGAG
 AGAGGAGAGA GAGAGAGAGA GATTAGACAT AAACATTTTA CCGCTTTCAG AATTTCTAAT
 ATTTTTACCT GGAAAATCCA
 R
 AAAAATGAAC CAGAAAGAAA ACTATTAAAA TAAAAAAGAA GTTAGTAAGA TTGCCAGATA
 TAAGAAATTA AATAAATGTA TATTAATCAG TGTCAATTTT CGTAATTAAA AACCTTATCA
 CAGGATACAA TGAGAAAATT GCCTTTCAAT ATAACAATAC AATTGACAGA ATATTTCAAA
 ATAAATTAAC GACAAATAAA

  Submitted Frequency for ss108824238 back to top
There is no frequency submission for ss108824238.


  dbSNP summary of Genotypes for ss108824238 back to top
No sufficient data to compute Hardy-weinberg probability for ss108824238.


  Submitted individual genotype for ss108824238 back to top
There is no individual genotype data for ss108824238.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement