NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss108999545           
Submitter
Handle1000GENOMES
Submitter SNP IDCEU.trio.12.15.2008_259920_chr1_224656581
RefSNP(rs#)rs1805404
Submitted Batch IDpilot_2_CEU_trio_final_release
Submitted DateMar 29, 2010
Publication CitedN.D.
First entry to dbSNPDec 16 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTRIO_CONSENSUS_CALLS
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:128

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss108999545|allelePos=201|len=401|taxid=9606|alleles='G/A'|mol=Genomic
 AGGAGGTGTT GCTGAAATAA CATGGGCACC ATACGCTTGA TCTGCACATG TGGGAGAGGG
 CAAGCTGGGG GAGGTTTGCT TTGCTCTCTG AGACGAGGCC CTCCTGGGAG CTTCAGGGTG
 GGGGCTGAAT GCCCATGCTG CCCCAGTATG TACACACCTG TCACTCCTCC AGCTTCCGCT
 GTCTTCTTGA CTTTCTGCTG
 R
 TCATCCCACC GAAGCTCAGA GAACCCATCC ACCTCAACGT CAGGGTGCCG GATGGAGTGG
 CCCACCTTCC AGAAGCAGGA GAAGTGGTAC CAGTGTGGGA CTTTTCCATC AAACATGGGC
 GACTAGAAGG AAGAGAAACA GAGGGAAGTA AGTAAGCAGT TAACTTTTGA CTTAGACCCA
 CTAGACCTTG ACCTTGACCT

  Submitted Frequency for ss108999545 back to top
There is no frequency submission for ss108999545.


  dbSNP summary of Genotypes for ss108999545 back to top
No sufficient data to compute Hardy-weinberg probability for ss108999545.


  Submitted individual genotype for ss108999545 back to top
There is no individual genotype data for ss108999545.