NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss109490818           
Submitter
Handle1000GENOMES
Submitter SNP IDCEU.trio.12.15.2008_2363549_chr10_62171893
RefSNP(rs#)rs2127352
Submitted Batch IDpilot_2_CEU_trio_final_release
Submitted DateMar 29, 2010
Publication CitedN.D.
First entry to dbSNPDec 16 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTRIO_CONSENSUS_CALLS
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleC/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:105

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss109490818|allelePos=201|len=401|taxid=9606|alleles='C/A'|mol=Genomic
 TGTCTTTACA GCCGGGGTCT TCTCTTTGGC AGAGCACTTA CAAAATATAG TGCATGACAC
 ACCACTAATG TTTCTCTGAA TTATCTGCCT CCTTCTTGTA CAGATACATC TCATCTCTCT
 TACATTCCTT CTACCCTCTA CTGTTCATTA CAATCTAGAT CAGGGATCAG TAAACTTTTT
 ATTTTGAGGG CCAGATTGTA
 M
 ATATTTTAGG CTTTGCAGGC CATTAGAGTT TCTGTTGCAA CTATTCAACT TTGCTATTGT
 AATGTGAAGG TGGCCATAAC TAACAAACAA ACATGGCTGT ATTCCAGTAA AATTGACCCA
 CACAAACAGG TGAATGGGGC ATAGTTTGCT GACTACTGAT CCAGATTGCT AGCACACTAT
 CCTTTCATTT TCTAAAATAT

  Submitted Frequency for ss109490818 back to top
There is no frequency submission for ss109490818.


  dbSNP summary of Genotypes for ss109490818 back to top
No sufficient data to compute Hardy-weinberg probability for ss109490818.


  Submitted individual genotype for ss109490818 back to top
There is no individual genotype data for ss109490818.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement