NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss109940958           
Submitter
Handle1000GENOMES
Submitter SNP IDNA19240_2008_12_16_501_chr1_1020428
RefSNP(rs#)rs6687776
Submitted Batch IDpilot_2_YRI_trio_final_release
Submitted DateMar 29, 2010
Publication CitedN.D.
First entry to dbSNPDec 16 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTRIO_CONSENSUS_CALLS
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:118

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss109940958|allelePos=201|len=401|taxid=9606|alleles='C/T'|mol=Genomic
 TTCCATGTGG AATTACGTTG ACATCTTCAT TGAAAATCAA TGGACTATAG AGGTGGGGTC
 TATTTCCAGT CTTTCTATTC TGTTCCACTC ACCTGTGTGT CTATTCTTCA GGGACACTGC
 GGCTGACTGG ATTACTGAAG CTGTAAGTAG AATAGAAACT TTGAAATCAG GGCACGTATC
 AGCTCCACTT TGATTAATTG
 Y
 TTTGGCAATT CCAGGTCACA TGTGTTTCCA TTTTAGACTC ATTGTGTCAA TTCCTACAAA
 AAAGCCTGCT GCGATTTTGA CTGGCAGAGC CGATGTTTTA ACAGGATTGA GTCTTTTCAT
 CACGGACATG CTGTCTCTCT TCATCCCTCC GCATCTTCTT CAATTTATCT CAGCAGTGTT
 TATAGTTTTC AGTGAACAGG

  Submitted Frequency for ss109940958 back to top
There is no frequency submission for ss109940958.


  dbSNP summary of Genotypes for ss109940958 back to top
No sufficient data to compute Hardy-weinberg probability for ss109940958.


  Submitted individual genotype for ss109940958 back to top
There is no individual genotype data for ss109940958.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement