NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss109955796           
Submitter
Handle1000GENOMES
Submitter SNP IDNA19240_2008_12_16_2311_chr1_2815227
RefSNP(rs#)rs897631
Submitted Batch IDpilot_2_YRI_trio_final_release
Submitted DateMar 29, 2010
Publication CitedN.D.
First entry to dbSNPDec 17 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTRIO_CONSENSUS_CALLS
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:120

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss109955796|allelePos=201|len=401|taxid=9606|alleles='C/T'|mol=Genomic
 GCTCCGCACA GTGAGGCTGC CACGTGGCCC TGAGGTTGCT TCTGCTGTTC GTGGTTGCCC
 TGGGTGTCTC CTGCCTGGAC CCTGGCCTAG GAGTGGGCAT CAACCAGGCA GAGCAAAGTC
 CAGCTGTACC ACCAGGGCCC ATGTGCGCCT ACCTGGGGCC CGGCTCACAG ACCAGCACGT
 GGTTCTGGCC TGAAAATCCG
 Y
 CTTAGCAAGT CCTGGCGCCA ACTGGGGCCT CCGAGCCTGG GCCCTGCCGG ATCCTGGCTT
 TGTCCAGAAG AGGGTTTTGC CACTGTCAGG GGACCTTGGC GTGCCATATG CTCCGGCCCC
 TGGAAGTCAA GGCTCAGGTC GTGGAGTTAG GTTGAGCTTG GGGATTTTCC AGGTCAGAGA
 ACCTGGGGCA GGTGGGGCTC

  Submitted Frequency for ss109955796 back to top
There is no frequency submission for ss109955796.


  dbSNP summary of Genotypes for ss109955796 back to top
No sufficient data to compute Hardy-weinberg probability for ss109955796.


  Submitted individual genotype for ss109955796 back to top
There is no individual genotype data for ss109955796.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement