NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss110890760           
Submitter
Handle1000GENOMES
Submitter SNP IDNA19240_2008_12_16_116546_chr1_99816377
RefSNP(rs#)rs1339856
Submitted Batch IDpilot_2_YRI_trio_final_release
Submitted DateMar 29, 2010
Publication CitedN.D.
First entry to dbSNPDec 17 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTRIO_CONSENSUS_CALLS
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:93

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss110890760|allelePos=201|len=401|taxid=9606|alleles='A/G'|mol=Genomic
 AATTTTTGTT TCAGCATCTT ATTTCAAAAA AAAGATAGCT AAATTGTATT CATTAATAAC
 ACCCCAGAAG TTCAGATTTT AATGCAATCA AGGAAAAAAC TTTGTTAGGA AGTGTGACCC
 AAAACCGAAT AGATTGCCTT TAGTGAGACT GAGATCATCA CTACTTAACT TGTTCAAGCA
 GAATCTGGGC CTTAATTAAT
 R
 TTTAGAAAAG ATTCATAAAT CAGGTAGTTA GTGAAGTCAA ATGTATGTGG GGCAATGTAT
 GTACACAGAA ATAAAGTAAA TATGACAAAA TGTTAGCAAT TTTTGAATCC AGGTAGAAAA
 TATATGGGTG TTCATTATTG TTCTCCTTTT CTGTATGCTT AATAATTTTT ATGAGATATC
 AAGAAAAAAA GTATGCAAAC

  Submitted Frequency for ss110890760 back to top
There is no frequency submission for ss110890760.


  dbSNP summary of Genotypes for ss110890760 back to top
No sufficient data to compute Hardy-weinberg probability for ss110890760.


  Submitted individual genotype for ss110890760 back to top
There is no individual genotype data for ss110890760.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement