NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss111659925           
Submitter
Handle1000GENOMES
Submitter SNP IDNA19240_2008_12_16_810461_chr4_1777692
RefSNP(rs#)rs7688609
Submitted Batch IDpilot_2_YRI_trio_final_release
Submitted DateMar 29, 2010
Publication CitedN.D.
First entry to dbSNPDec 17 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodTRIO_CONSENSUS_CALLS
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginG:Germline A:Germline
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:104

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss111659925|allelePos=201|len=401|taxid=9606|alleles='A/G'|mol=Genomic
 AGTAGGCTGG GCCCTGCCCT GAGATGCTGG GAGCAGCGGG GAGAGGTGGA GAGGCTTCAG
 CCCTGCCTCC CACCCCTTCC CCAGTGCATC CACAGGGACC TGGCTGCCCG CAATGTGCTG
 GTGACCGAGG ACAACGTGAT GAAGATCGCA GACTTCGGGC TGGCCCGGGA CGTGCACAAC
 CTCGACTACT ACAAGAAGAC
 R
 ACCAACGTGA GCCCGGCCCT GGGGTGCGGG GGTGGGGGTC ATGCCAGTAG GACGCCTGGC
 GCCAACACCG CCTTCCCACA CCCTCCCAGG GCCGGCTGCC CGTGAAGTGG ATGGCGCCTG
 AGGCCTTGTT TGACCGAGTC TACACTCACC AGAGTGACGT GTACGTGTCC TGCAGAGCTC
 AGGCTTCAGG GGTGGAGGCG

  Submitted Frequency for ss111659925 back to top
There is no frequency submission for ss111659925.


  dbSNP summary of Genotypes for ss111659925 back to top
No sufficient data to compute Hardy-weinberg probability for ss111659925.


  Submitted individual genotype for ss111659925 back to top
There is no individual genotype data for ss111659925.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement