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Submitted SNP(ss) Details: ss11171413           
Submitter
HandleWI_SSAHASNP
Submitter SNP IDchr10.NT_008583.15_1014107
RefSNP(rs#)rs7393340
Submitted Batch IDWIBR_FOSMID_END_SNPS_200306
Submitted DateJul 03, 2003
Publication Cited[1] SNPs detected by comparing WIBR fosmid end reads to NCBI build 31 Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJul 3 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWIBR_FOSMID_END_SNPS_200306
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleG/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec_g/a
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:G248P88982FD5.T0position:367quality:45

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss11171413|allelePos=648|len=872|taxid=9606|alleles='G/A'|mol=Genomic
 TTAGGTTAGA ATATAAccaa ggcgggtgga tcacctgagg ttgggagttc aagaccagcc
 tgaccaacat ggagaaaccc catctctact aaaaatacaa aattagctgg gcatggtggc
 acatgcctgt aatcccagtt actcgggagg ctgaggcagg agaatcattt gaacccagaa
 ggcagaggtt gcagtgagct gggatcgtgc cattgcacac cagcctgggc accaagagcc
 aaacctcatc tcaaaaaaag taaataaata aataaaaaTG ACTAATAAAT ACTTACTGAA
 AGTATAAGTA TAAAAAACTT TAATTATGTT AATTATGAGA TTTTAAAACT GTATTACTGG
 AGAAAGAGAC CAAATCTCCT CATAATACtt tttttgttaa tttatttaat aataaaGATG
 AACATAAACA CCTGTGCAAT TCAGTGTTTA AAGTTTGCCA AGGTATATGT ATATATTTTT
 CCCAACGTTG atgctgtgag aagcccaagc catggagagg ccccaggcag gtgctctggt
 caacagccca agctaaatgc ccagccaaca ccagcatctg caaccagccc tgtgcgtgag
 gctttgcaga tgtctagtct cgtcaagccc tgcagatgtc tagtccc
 R
 tcaagcccta cagatgtctc cagcACAGAT AGAGCCTACA GATGTCTCCC CGCGAAACCA
 CACAGCCAAG TCCAGGCGGA AAATGTGAAA GATGTTTCTA CCAAGCCACT GAGTTTCTGG
 GTGGTTTGTT TTACAGTAAT AGAGGAGAAC CAGAATGGTC TGTTCCTGCA CTCTCCAGTG
 GTCCCCTATG TTCAAACACT CTGCTTAGCA AGCTTCATCA CCCA

  Submitted Frequency for ss11171413 back to top
There is no frequency submission for ss11171413.


  dbSNP summary of Genotypes for ss11171413 back to top
No sufficient data to compute Hardy-weinberg probability for ss11171413.


  Submitted individual genotype for ss11171413 back to top
There is no individual genotype data for ss11171413.