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Submitted SNP(ss) Details: ss11204223           
Submitter
HandleSC_JCM
Submitter SNP IDchr1.NT_004321.15_1029516
RefSNP(rs#)rs7416185
Submitted Batch IDTSC_200306
Submitted DateJul 03, 2003
Publication Cited[1] SNPs detected by comparing chromosome and DNA specific sequences to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJul 3 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTSC_200306
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:p4_2a1122f04.q1cSCFposition:181quality:37

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss11204223|allelePos=6598|len=9329|taxid=9606|alleles='T/C'|mol=Genomic
 AAAagaactt ccaggggcta attttgaagg aaaccaggct cagagaccca gatgtggatc
 ctactgctct ggggcagtta ggaagagtga gcccaccact actgggccaa agtcaggatg
 atgcaagctg gaccttcaga cagggtgtta ctcgagatca ccttcggaac aagacatgca
 gccctgcacc cccctgcacc cccttgcacc cttctgcatc ctcctgcacc acccccacat
 gtttcccaca ccaagttttc cttccaaaac ctctcactca gcccagaaga cagagggtct
 cttggaggca tgagcccagc catgtcccat cggctggcat ttgtttaata aacggctttc
 cttccaccac acctcgcttc tcatgttttt ggtctttgag cagccacgct tgagctggtt
 gcaGatctgg tgccttgtgt gaggcactgt gttgtgagtg gctcagcctg tgtacctggt
 ttccaatgaa ggcagagatt ggccacagca gtcccaggat ttacccactc ttgctgtcag
 gcaggacagc agctgcttga aaatgccagc tgctcatggc cagctgaccc caaggctagg
 accttaggga attcctagtg gctgccgaga ctgcctttgt cttggggatt ttcccttccc
 tctccttcat gacatcagca tctctcatgc tctgctggtg ggagggaagc agtatgtggg
 atgtgaactg aagtgcacct ggaaatcctc tgcatctgcc atctggggct ctagctgtct
 agagctagta ttggtagtct gtggtgccac ctgggtctct gtgccatctg gacctaacgc
 aggtaactct gtggtgccgc ctgggtctct gtgccatctc gacctaacgc aggtcgctct
 gtggtgccgc ctgggtctct gtgccatctg gacctaacac aggtcactct gtggtgccgc
 ctgggtctct gtgccatctg gacctaacgc aggtcactct gtggtgctgc ctgggtctct
 gtgccatctg gacctaacgc aggtcactcc atggtgctgt ctgggtctgg gacaggacct
 caggactttg ctccaatctc ccctctgttt ggagggatct gtttggaggg ctgtgtctac
 attggatcta tttgtgtttg tgtctctgtt tagtgttgca cccccctctg agggtgctta
 ggcacagtct gcatcccaat ggccaagact aggtccatct ggttgtcaga aagtagcaag
 ataggctgcc cctctcctca ctaggtgtat ttgtacattt tcacactgct gataaaaaca
 tacctgagac taagaagaaa aagaggttta attgggctta cagttccaca tggctgggga
 ggcctcagaa tcatgacggg aggtgaaagg cacttcttac aaggcggtgg caagagaaaa
 tgaagaagat gcaaaagcag aaacccctga taaaaccatc agatctcatg agacttattc
 actaccttga gaacggtgtg ggggaaactg cccccatgat tcaaattacc tcccaccttc
 tccctcccac aacctgtggg aattatggga gtacaattca agatgagatt tgtgctgtta
 tgaccgtcct tgaagatttc cctgaaccag ttaacattgt ctctgattca gcgtaggtac
 tacatgttgc tcacaacaat tgaaactgcc ttaatccaat ttctgcctga tgatgaccta
 ttctttcttt ttcaaaggtt tcagtctgtg cccagagcaa ggtcttctcc tttctacatt
 actcacattt gggcccacac acccctcccc ggacccctct cgcagcaaat gctagagctg
 atacattagt tactcccgtt tttacagatg caggtggagg agtagagtct tctctaaact
 cccccgggga aagggagact ccctttcccg gtctgctaag tagcaggtgt ttttccttga
 cactgacgct accactagac cacggtctgc ttggcaacgg gcatcttccc agacgctggt
 gttaccgcta gaccaaggag ccctctggtg gccctgtccg ggcataacag aaggctcgca
 cttgtcttct ggtcacttct caccatgtcc cctcagctcc catctctata tggcctgctt
 tttcctaggt tatgattata gagcgaggat tattataata ttggaataaa gagtaattgc
 tacaaactaa tgattaatga tattcatata taatcatgtc tatgatctag atctagcata
 actcttgttg ttttatatat tttattatac tggaacagct cgtgccctca gtctcttgcc
 tcggcacctg ggtggcttgc tgcccacatc tccccccttt atattaacta ggatcaccat
 cgccatcatt gcttgtcatt gacttcggac ttgttttcgg actccttgga ggcatctgca
 gactaaacgg agacaacata agcataccaa tactaataat gccagtgaca acaatgatcc
 tccaaggggt ttgatccatt taaagggatt aagatcagat aattctttag ttattccttc
 aaaaatgtct gagccaggaa cagtggatga atgagcttgt gaagcctcaa aaatttgctc
 tttaagtttt gaaatatcca aggttaagtt atcatcccag gcttttaaat gtcttgagac
 cttttcccag ctatgttgac ctttattata agcataaggc attatgcaat agtcagaagt
 attccaatca cactgtaatt gcataaggtg ttccaaattc ataactctgt ctctgagcca
 cattacactt tgacggagat cattaatttg attggctaat tttttatcaa tttgagcctg
 agaattccaa agtccggagg agtttttctg ccgtgcttta acatattgag cggtttgaac
 ataattgtag atggcaactc cagcagctgc tgctgctgca gtaactgcaa ttagacctgc
 aatgacggca ataagagtaa aaataaatct ctttgttctt ttgaggataa ctttaagaac
 ttcattgact atgtgaatag agggggaaga ctcccaagga cgatgtagag aaactggtat
 ccatacctcc tccctagccc gtaccaagag aatacttgta gtgggaatga aagtagcatc
 aatgcatgtg aacagctgac agttatcaca ttctacagtt tgtgtactgg gaatgataat
 tatatttcca accaacagca tgtaaggggg tttgacacag ctcctgatgg gtatcacctg
 ttcagatatc aaggtgatgt tgaatgtgtg tgttttggta ttagtgtgaa ggagttgata
 ggtagtgttc cgtatcctta ttcctgtcat agctgcagca atttccataa ttcaggatgt
 tctggggtaa caatgggatg aatcattttt ggtgtagggg gaacaatgcc tgcgtccatc
 catttaaatg ggtaaggaga cacccattgt ctcaacctgt atgactgcca tccatcctct
 atatgatctt ttttcttttc tttctttttt tttttgagat ggagtcttgc tttgttgccc
 aggctggagt gcagtggcgc gatcttggct cactgcaagc tctgcctcct gggtttacgc
 cattctccta cctcagcctc ccgagtagct gggactacag gcgcctgcca ccacgcccag
 ctaatttttt gttttttagt agagacgggt tttcactgtg ttagccagga tgatcttgat
 ctcctgacct tgtgatccac ccgcctcggc ctcccaaagt gctgggatta caggcatgag
 ccactgtgcc cggcccatcc tctatataat ctaacaaata gttaaactcc gagcattttg
 tattttgggt ggagcaattt cgccaataat gcccttttgg agcccagtca ataacaacac
 ccgtaggtag ggtttggaac agtatggcct tcggagtatt agaatcattt cataagattg
 aatttagtta aaaaaagaaa aaaggcccct ttgtaggttt cttggagcag gctggcagtc
 cttttgtttc tcagagtgcc tcatccttgg agttataatg caatttcagt cgctgggagg
 gaacccacgc gggttgttgt ccttttcctg gggaaacaca agcgaaagcc ctagcccaag
 ttatgactct gtctaattcc catttgttag tttttgcgtc ctttcaccat acccgcattc
 gtttttgtgg atcaaattta tttccagtga catgtggttc tgtggctgta aagtttggtt
 tcttgctggg tgtaagaaag ctcgtgtaaa aagaggcagg tttaactgag catgaggtgt
 ggtgccatcc ccctttgttt tatgtcctgc tttcgaagtt gacctttcag tgttttattg
 gctcgttcca ccgaggcctg tcctcgagag ttacagggga tgctggttgt gtgagcaatt
 gcccacgtct cagtgaactt tttaaaagca gcactagtgt agctggggct gttatcagtt
 ttcagtttct cgggacagcc cataacggag aaacaggaac gcatatgtcg tttaccatga
 gctgtacttt cccctgcgtg acaagtggcc cagataaaat gagaaaaagt gtcgatagtt
 acatgtataa aagaaagctt gccaaaagca ggataatgag tcacgtccat ttgccagaga
 gcattctgtg aaagtcctct agggttaact cctgaggaaa gtggctgtaa gattaacact
 tggcaagtag gacggtgacg aacaatggtt ttagcttgtt tccatgtaag gggaactttt
 tccggagtcc tgcagcattg acaggtgtta aagcatgaaa attttctgca tctgtaaaaa
 cgggaggaac taatgtatga gctctggcat ttgctgccga gaggggtctg gggaggggtg
 tgtgggcccg aatgtgagca atgtagaaag gagaagacct tgctctgggc acagactgaa
 acctttgaaa aagaaagaat aggttatcat cgggcagaaa ttggattaag gcagtttcaa
 tgttgcgagc aacatgtact acatacgctg agtcagagac aatgttaact ggttcaggga
 aatcttcaaa gacggtcata acagcaggca gttcagctcg ttgtgctgaa atagcccctg
 tgttaagaac acgttctctg ggacctgtat atgctgctcg gccattacag gaagcatcag
 taaaaacagt gacagcttca gctaatgggg tgtttctagt aatgttaggt aaaatccaag
 aagtgagttt aaggaactga aataatttta cattaggata gtgattgtca attatacccg
 agaaacctgc caagtgtact tgccaagtga tacaggttgc aaaagcctgt tgaacttcta
 atcgggtgag gggaacaatg atttttttgg gcttaataac ctgacttcta gctgcattgc
 taaatagtga taaggagaag aagtctggat tttttttttg tggagggggc gcagtaacca
 aaccggctgc tgcaactgtt tgttgtcctg cagaaaaaca agatattaac acggagcgtg
 aaggtgccgc gagatcagct gcctgctgag taagatcagc aggctgtggc tgattttgtg
 ccgcagggac ggcaggtatt ggaggttgta aaattacagg aaattgccag gcgttgggat
 ccccatattt tcttgcctgt gctatagccc tcataagagg agtgtcattt tgaggaatct
 atgtaacttg ttgcttgtga gcagcaaggg tagACGAGAT TACCTGCCGA GCACGTCCTT
 CATGGGCCTG AAATTCAGGC TGCTGTGGCA ACTGCGGACC AGGCTTCAAA GGAGTCTGTG
 ACTCCAGGGG AGTCGGATTA GTAGGAAAGG AACCAGGTTT CAAGGGAGCC TGTGACTCTA
 ACCGAGTCTG ATTAGGAGGA AAGGAAACAG GCATGAGAAA ACCAGGCTAt ggagggatag
 ggttgagggc ctcattaccg ggcggaacag gcagaaggtt gagaccccta cagcagggct
 gaacagggac agggttgaga taaaacagga gggtttttat aaagcttaaa taagctgagt
 acttagtact ggcttgtccc atggtgtccc cggaatactc tgagtgctct agcttaccac
 caagcttact gaccacaatc ctcaggaatc tctggtcaaa atcctctgct gaatcccaca
 ctcagggtgc aacttcacac agcgagagag agccccacgt tggagcgccg gatgtaggga
 ccagccccac agtgttggtg cgttctgctc cccatgtgcg gagatgagag attgtagaaa
 taaagacaca agacaaagag ataaaaagaa aagacagctg ggcctggggg accaccacca
 ccaagacgcg gagaccggta gtggccccga atgcctggct gcactgttat ttattggata
 caaaccaaaa gggacagggt aaagagtgtg agtcatctcc aatgataggt aaggtca
 Y
 gtgggtcaca tgtccactgg acagggggcc ctttcctgcc tggcagccga ggcagagaga
 gagggggaga gagagagaga gacagcttac gccattattt ctgcttatca tagactttta
 gtactttcac taatttgcta ctgttatcta aaaggcaaag ccaggtgtgc aggatggaac
 atgaaggcgg actaggagcg tgaccactga agcacagcat cacagggaga cggttaggcc
 tccggataac tgcgggcgag cctaactgat gtcaggccct ccacaagagg tggaggagca
 gagtcttctc taaactcccc cagggaaagg gagactccta agtagcaggt gtttttcctt
 gacactgatg ctactgctag accacggtct gcctggcaac gggcatcttc ccagacgctg
 gtgttaccgc tagaccaagg agccctctgg tgaccctgtc tgggcataac agaaggctcg
 cactatcgtc ttctggtcac ttctcaccat gtcccctcag cccccatctc tgtatggcct
 ggtttttcct aggttatgat tatagagcaa ggattattat aatattggaa taaagagcaa
 ttgctacaaa ctaatgatta atgatattca tatataatca tgtctgtgat ctagatctag
 tataactctt gttgttttat atattttatt atactggaat agctcgtgcc cttggtctct
 tgtctcggca cctggatggc ttgctgccca cagatgtctg ggtcatttcc aattcagaaa
 agactgtgct atgggaaaat gtgtttctaa aaattatgga attgtttcat ttacaaaata
 acatctgata gttcaagatt tcttgcttcc tgggttttca ctaaaattta aggttactaa
 gaataggaat tctaattaat atataattct gtaaatTGTG ttattgagag aaaaaataat
 tttatgtaat ttgaaagttg tttaaaagtt atttatgaag aaagataaaa agaaactaat
 aggtagggga gagagtaata aaacaagttt tggctatgaa gatgtatttt tggtaaggat
 atgaagaaaa taaaataatt ttatataaga aaggatatta tgtggtaaat tcttatccta
 aagtaaaatg actagaaaag agagaagtat cagacacgtc agaaagtcca aacatgttgt
 agatggtcag tgtaggttgt gataaggttt gtaaagggca attACCTGAG ACTGGGTAAT
 TTATTtttat ttatttattt atttatttat ttattttttg agacagagtc tcgctctgtc
 gcccaggctg gagtgcagtg gcgcgatctc ggctcactgc aagctccacc tcctgggttc
 atgccattct cctgcctcag cctcctgagt agctgggact acaggtgcct gccaccatgc
 ccggataatt tttttttttt tttttgtatt tttagtagaa atcgggtttc accgtgttag
 ccaggatggt ctcgatctcc tgaccttgtg atcagcccgc ctcagcctcc caaagtgctg
 ggattacagg tgtgagccac tgtgcctggc tgagactggg taatttataa agaggtttga
 ttggctcaac gttctacagg ctgtggagga agtatggcca tgagcatctt cttggggagg
 catcagggag cttttactca gggcggaggc gaagcaggag ctagagagtg agggggaggt
 gccacacact ttcaaacaag cagataactc tctgttatca ggacaggacc aagcggatgg
 tgctaacctc ttcatgagaa atccgccccc atgatccagt cacctactac caggcccctc
 ctccaacact gaggattaca tttcattatg agatgtgggc agggacacag atccaaacca
 tatcaAActc accactgcac tccagcctgg gtggcagagc ccagcagact ccCAGAGTTG
 AGGAGACAGC TGAGAAGCCA AGGTCAGGGT GGCTAGGGTC AGGGGACAGG GCACCCTTAG
 CTTGAGCACC TCCACTGAGC ACCAGCCACT CTCTTCTTAT GGGGCAACTC CCAGCACTGG
 ACACtttttt ttttttgaga tggagtctca ctctgtcatc caggctggag tgtagtggcg
 caatcctggc tcgttgcaac ctccacctcc tgggttcaag caattctcct gcctcagcct
 ccaactagct gggattactg acacctgcca ccacacctga ctgatttttg tatttttact
 agagacaggg gttcaccatg ttgcctaggc tggtctcgaa ctcctgaccg caagtaatct
 gcctgccttg gcctcccaaa gtgctgggat tacaggtgtg agccaccatg cctggccACT
 GGATGCATTT TAGACAGGAC CACTCAGGgg gtgtagtagc tcacacctgt aatcccagca
 ctttgggagg ctgaggtggg aggatcagtt gagctcagga gttccagacc agcctgggca
 acatagtgag attcccctgt acaaaaatgt aaaaattagc tgggtgtggt ggcatgtgcc
 tgtagttcca gctactgagg aggctgaggc aggaggatca gttgagccca ggaggttgaa
 ggttgcaacc agctgagatc acaccactgc actgcagtct ggatgacaga gcaagaccca
 atctcaaaca ataataaaca aaGAGGATCA G

  Submitted Frequency for ss11204223 back to top
There is no frequency submission for ss11204223.


  dbSNP summary of Genotypes for ss11204223 back to top
No sufficient data to compute Hardy-weinberg probability for ss11204223.


  Submitted individual genotype for ss11204223 back to top
There is no individual genotype data for ss11204223.