NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss11378609           
Submitter
HandleWI_SSAHASNP
Submitter SNP IDchr1.NT_004321.15_1032216
RefSNP(rs#)rs7530315
Submitted Batch IDWI-WGS-200306-A
Submitted DateJul 03, 2003
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJul 3 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodWI-WGS-200306
Ascertainment Samplesize3
PopulationN.D.
Allele
Observed AlleleA/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:S213P65215RH6.T0position:459quality:37sequence:S213P60284FB8.T0position:446quality:41

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss11378609|allelePos=3258|len=5343|taxid=9606|alleles='A/T'|mol=Genomic
 ACCAGGCTAt ggagggatag ggttgagggc ctcattaccg ggcggaacag gcagaaggtt
 gagaccccta cagcagggct gaacagggac agggttgaga taaaacagga gggtttttat
 aaagcttaaa taagctgagt acttagtact ggcttgtccc atggtgtccc cggaatactc
 tgagtgctct agcttaccac caagcttact gaccacaatc ctcaggaatc tctggtcaaa
 atcctctgct gaatcccaca ctcagggtgc aacttcacac agcgagagag agccccacgt
 tggagcgccg gatgtaggga ccagccccac agtgttggtg cgttctgctc cccatgtgcg
 gagatgagag attgtagaaa taaagacaca agacaaagag ataaaaagaa aagacagctg
 ggcctggggg accaccacca ccaagacgcg gagaccggta gtggccccga atgcctggct
 gcactgttat ttattggata caaaccaaaa gggacagggt aaagagtgtg agtcatctcc
 aatgataggt aaggtcatgt gggtcacatg tccactggac agggggccct ttcctgcctg
 gcagccgagg cagagagaga gggggagaga gagagagaga cagcttacgc cattatttct
 gcttatcata gacttttagt actttcacta atttgctact gttatctaaa aggcaaagcc
 aggtgtgcag gatggaacat gaaggcggac taggagcgtg accactgaag cacagcatca
 cagggagacg gttaggcctc cggataactg cgggcgagcc taactgatgt caggccctcc
 acaagaggtg gaggagcaga gtcttctcta aactccccca gggaaaggga gactcctaag
 tagcaggtgt ttttccttga cactgatgct actgctagac cacggtctgc ctggcaacgg
 gcatcttccc agacgctggt gttaccgcta gaccaaggag ccctctggtg accctgtctg
 ggcataacag aaggctcgca ctatcgtctt ctggtcactt ctcaccatgt cccctcagcc
 cccatctctg tatggcctgg tttttcctag gttatgatta tagagcaagg attattataa
 tattggaata aagagcaatt gctacaaact aatgattaat gatattcata tataatcatg
 tctgtgatct agatctagta taactcttgt tgttttatat attttattat actggaatag
 ctcgtgccct tggtctcttg tctcggcacc tggatggctt gctgcccaca gatgtctggg
 tcatttccaa ttcagaaaag actgtgctat gggaaaatgt gtttctaaaa attatggaat
 tgtttcattt acaaaataac atctgatagt tcaagatttc ttgcttcctg ggttttcact
 aaaatttaag gttactaaga ataggaattc taattaatat ataattctgt aaatTGTGtt
 attgagagaa aaaataattt tatgtaattt gaaagttgtt taaaagttat ttatgaagaa
 agataaaaag aaactaatag gtaggggaga gagtaataaa acaagttttg gctatgaaga
 tgtatttttg gtaaggatat gaagaaaata aaataatttt atataagaaa ggatattatg
 tggtaaattc ttatcctaaa gtaaaatgac tagaaaagag agaagtatca gacacgtcag
 aaagtccaaa catgttgtag atggtcagtg taggttgtga taaggtttgt aaagggcaat
 tACCTGAGAC TGGGTAATTT ATTtttattt atttatttat ttatttattt attttttgag
 acagagtctc gctctgtcgc ccaggctgga gtgcagtggc gcgatctcgg ctcactgcaa
 gctccacctc ctgggttcat gccattctcc tgcctcagcc tcctgagtag ctgggactac
 aggtgcctgc caccatgccc ggataatttt tttttttttt tttgtatttt tagtagaaat
 cgggtttcac cgtgttagcc aggatggtct cgatctcctg accttgtgat cagcccgcct
 cagcctccca aagtgctggg attacaggtg tgagccactg tgcctggctg agactgggta
 atttataaag aggtttgatt ggctcaacgt tctacaggct gtggaggaag tatggccatg
 agcatcttct tggggaggca tcagggagct tttactcagg gcggaggcga agcaggagct
 agagagtgag ggggaggtgc cacacacttt caaacaagca gataactctc tgttatcagg
 acaggaccaa gcggatggtg ctaacctctt catgagaaat ccgcccccat gatccagtca
 cctactacca ggcccctcct ccaacactga ggattacatt tcattatgag atgtgggcag
 ggacacagat ccaaaccata tcaAActcac cactgcactc cagcctgggt ggcagagccc
 agcagactcc CAGAGTTGAG GAGACAGCTG AGAAGCCAAG GTCAGGGTGG CTAGGGTCAG
 GGGACAGGGC ACCCTTAGCT TGAGCACCTC CACTGAGCAC CAGCCACTCT CTTCTTATGG
 GGCAACTCCC AGCACTGGAC ACtttttttt ttttgagatg gagtctcact ctgtcatcca
 ggctggagtg tagtggcgca atcctggctc gttgcaacct ccacctcctg ggttcaagca
 attctcctgc ctcagcctcc aactagctgg gattactgac acctgccacc acacctgact
 gatttttgta tttttactag agacaggggt tcaccatgtt gcctaggctg gtctcgaact
 cctgaccgca agtaatctgc ctgccttggc ctcccaaagt gctgggatta caggtgtgag
 ccaccatgcc tggccACTGG ATGCATTTTA GACAGGACCA CTCAGGgggt gtagtagctc
 acacctgtaa tcccagcact ttgggaggct gaggtgggag gatcagttga gctcaggagt
 tccagaccag cctgggcaac atagtgagat tcccctgtac aaaaatgtaa aaattagctg
 ggtgtggtgg catgtgcctg tagttccagc tactgaggag gctgaggcag gaggatcagt
 tgagcccagg aggttgaagg ttgcaaccag ctgagatcac accactgcac tgcagtctgg
 atgacagagc aagaccc
 W
 atctcaaaca ataataaaca aaGAGGATCA GGtgtcttag tctgcttgtt ataacaaaat
 acctgagaca gggtaattta tagaaagcag aggtttcttt ctaacagccg tggaggctgg
 gagtccaagc atcctctgga gggagagagg gaaggcaggc tgtgtcctca cagggtggaa
 ggtggagggg gatcccacac ccaagacccc ccacccactt ttttttttga gatggagttt
 cactcttgtt gcccaggctg gagtgcaatg gcacgatcgc ggctcaccgc aacctccacc
 tcccgggttc aagtgattct cctgcctcag cctcccaagt agctgagatt acaggcatgt
 gccaccacgc ctggctaatt ttgtattttt agtagagacg gggtttctcc atgttggtca
 ggctagtctc gaactcccga cctcaggtga tctgcctgcc ttggcctcgc aaagtgctgg
 gattacaggc atgagccact gcgcccggcc cacttttttt ttttgagaca gggtctcact
 ctgtcaccca ggctgagtgc actggcatga tcatggctca cttcagcctt gacctccagg
 gctcatgtga tcctcctgcc tctgctaccc aaataggtgg cactacaggc acatgccacc
 atgcccagct aattttatat tttttgtaga gatggggtct ctctttgttg cccaggttgg
 tcttgaactc ctggacgccg gtgatcctct catctcggtc tcccaaaggc tgggtttata
 ggtgtgagcc actgtgtctg gccccaagtc cttttattgt tgcacaaatc caaccatgag
 ggcagggcct atggtcaggc cccacctgtc tatactgttg caccgggcag tgagtttcca
 gcctgtgaat ttgtggggca cattcaCCTC CCAGCACCAG GAAACAGAAT GCTGCCTGAC
 GCTGCTACCT AGAGTAACAC AGtgttgcac gctgaaagag tgagggtcat gatcaactca
 gtataccact ggaggcgacg tgagtaaaca gcaaactgtt tctcatacat gcagaatgtt
 ggcaaacaaa ctgcgtctgc cacctagaag gaatgctgag ggcagtcacg cctcaagcac
 agtgtttctt gtgattaggt acatctgaag cctgttagta acaatatgaa cctgtgatca
 attaagcagc tgaccgatcg ttacctcctc ctccctcctc ctgctaccca ataaatagga
 agggctgtgg aagctcgggc ggtgcctttg ctcactagaa gcagggagct ctcttcttct
 tccccgtgtt acccttccgt taaaatagtt acttttgttt taagttttca tttctatgtt
 tgtccctctt ccttcagtct cataatgatg gtctcaagta gtaacagcag tctgccacaA
 CACAGGAGGT GTGAAATCCA CATTACAGAG GCAAATGGGT TGCTGAGGAC ACTGATGTTG
 GTGATCAAAT AGTTTGTGGG GGgcctgggc aacatggtga gaacccacct ctactataca
 tatatataca aaaattagct gggggtggtg gcttgtgcct gtagtcccag ctactcagga
 gactgacgtg ggaagatggc ttgagccctg gagttggaga ctgcagtgag tcatggtagc
 accactgcac tccagcctgg gcaacagagt gagaccctgt ctctggaatt aaaaaaaaaa
 GGTCCAggct gggcgtagtg gctcacgcct gtaatcccag cactttggga agccgaggtg
 ggtggatcac ctgaggttgg gagttcgaga ccagcctggc caatatagta aaaccctgtc
 tctactaaaa ttacaaaaat tagccaggtg tggtggcagg tgcctgtagt cccagctact
 tgggaggctg aggcaggaga atcccttgaa cccgggaggc ggaggttgca gtgagccgag
 attgcaccac tgcactccag cctgggtgac agagtgagac tccgtctcaa aaaaaaaaaa
 aaaGTTCCCC TGCCTGGCCC TGCTCCAGGG CTTCATTCTC AGGAA

  Submitted Frequency for ss11378609 back to top
There is no frequency submission for ss11378609.


  dbSNP summary of Genotypes for ss11378609 back to top
No sufficient data to compute Hardy-weinberg probability for ss11378609.


  Submitted individual genotype for ss11378609 back to top
There is no individual genotype data for ss11378609.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement