NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss114057896           
Submitter
Handle1000GENOMES
Submitter SNP IDNA19240_2008_12_16_2224182_chr10_134001024
RefSNP(rs#)rs2259594
Submitted Batch IDpilot_2_YRI_trio_final_release
Submitted DateMar 29, 2010
Publication CitedN.D.
First entry to dbSNPDec 18 2008 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodTRIO_CONSENSUS_CALLS
Ascertainment Samplesize4
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
depth.cov:143

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss114057896|allelePos=201|len=401|taxid=9606|alleles='A/G'|mol=Genomic
 TCAGGAAGTC AGTTCCGGCT CCAAAGGCCG CCGGAAGGAG TCCTGGTTCT TTTCTTTCTG
 ATTCTTTTGT CTACTGTTTA CATCTTTTAA GGGTAAGAGA TTGGGTTTTT GTTTTTTAAC
 TTAGTATATA CGGTTCTGGT TGTTAGTAGT TCTTTTGGAA ATAGATTTTG GATATATCAT
 GTTTTACAAA TTAGTTGGTT
 R
 ACAAAACATT CTCTGATTCT CTTTTCCATG GAAGCAATTG CATCTGCAAA GGAATGCCCT
 GTGTGTGATT CCTCAAGATT TCTTTCAGTT GCTTCCGAAC CTGACTTGGC TGGACCTCCG
 GTACAATAGA ATTAAAGCGC TTCCTTCTGG GATTGGAGCT CACCAGTAAG TTGTTTATGT
 TTCCAGATTT TAAAAATCAT

  Submitted Frequency for ss114057896 back to top
There is no frequency submission for ss114057896.


  dbSNP summary of Genotypes for ss114057896 back to top
No sufficient data to compute Hardy-weinberg probability for ss114057896.


  Submitted individual genotype for ss114057896 back to top
There is no individual genotype data for ss114057896.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement