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Submitted SNP(ss) Details: ss11427364           
Submitter
HandleWI_SSAHASNP
Submitter SNP IDchr1.NT_028050.12_949366
RefSNP(rs#)rs7554246
Submitted Batch IDWI-WGS-200306-A
Submitted DateJul 03, 2003
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJul 3 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodWI-WGS-200306
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 13
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:S213P64276FE3.T0position:-105quality:30

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss11427364|allelePos=4153|len=4502|taxid=9606|alleles='T/C'|mol=Genomic
 CAGGGCTGTT TTAAaaataa actttttact tttgaaatat ttttaggttt acagaaaagt
 tgtgaagata gtaacagaga gttcttatat actctttacc cagttttagt ttttcctaat
 gttaccatca tactttttcc atggtacatt tgtcaaaagt caacattagt acattgctac
 aaggtaaact ccagacattt cttggacttg aattaatttt cccagtagca ttctttttct
 attccagtac ccaatccagg gagccacatg tgtttagtta tcatgtcact gtcactttaa
 tgtcctctgg tctgtgacag tttctcagag cgtccttatt tttcaccacc ttgagagttt
 ttagagtatt gattatggat tttgtagagt gtccttagaa ttgattttgt atgataatgc
 ttttctcatc actagactgg gattatgtgt tttgggaaag aatgccacag aagtgaagtg
 tcctcattac acatattagg ggaacatgat atgcatataa catcactggt gatgtcaacc
 ttggtcacac ggttaagata gtttgctggg tttctccact gtaaagtcac catttttccc
 aattcctact ctattctttg aaagcaaagc tgtaagtcta acaacattca aaaaggggaa
 aggaagtttc atctacataa attatttgaa atttttctgt caggaagatt tgtctcttct
 cccctattta ttattcaatc atatttatct attcttatac tgatatatat ataaatagat
 atacataaat ttatagatac attcatatat atgaaataga aaatgaatgt atggatacat
 tcatacatat atattcatgt atattcatat gtatgtacat atatattcat gtatattcat
 atgtatgtac atatatattc atgtatattc atacatacat atgtattcat acatattcat
 acatatgtat tcgtatatat gtatggattt atccataaat ttattttcta tttcatatta
 catttctaaa ttatgctact tattttgttg ctcagatgag tccagctttg gacattgggc
 attccttcag tttgactact gcattgtatt gatatgctcc cattcttaaa tttcttttag
 cacatcctta ctttttggta ctacaagatg ctccaggacc atcttgaatt ttttttccca
 gttctagaac cagccattta tccaaggacc cctggttcat taaattggaa aatcatattt
 ataaaccaag atctgttcac tggagtgctt gtctctcctg ggtgtgactg cttctagatt
 ttcactgtgg cagagccaga taatgtatgt atattatcat atgtataata tatacacatc
 aaaatatttc ctatttgGTT TTGGTTTGCT CCTTCTGTGT ATGTATTTGG GGTTTTTTTG
 TATGAAGTTT CCATTGTTTA TTTATTTCCA ATTTTTCATG TCATTTATTA CTTTTTTTAA
 GAAATTCAAA TTCTATTTTG CATATGGGGT ATGTGTGTTG GTTTGTTACA TGTGTATATT
 GCAGAcaggt agtgagcaca gtacccacta ggtagttttc aacccatgct ccctccctct
 cttccccttc tagtagtctt tagcgtcttt tgttctcatg tttatgtcaa tgtgtgctca
 acatttagct cccactttta agtgagaaca taaggtattt ggttttctgt tcctgcatta
 gttcacttag gattatgccc tccagctgca tccatagtga tgcaaaggac atgatttcat
 tcttttttat ggctgtatag tattccatgg tatatatgta ccttattttc tttatccaat
 caaccactga tgggcatcta agttgattcc attatctttg ctattgtgaa tggtgaggca
 atgaacatac aagtatatgt gtctttttgg tatatgatct attttctttt gggtatagac
 caagtaatgg gattgctggg ttaaattgta gctctgtttt aagtttgtaa gaaatctcca
 aactgctttc cacagtggct gaactaattg acatttccac caacagagtt aaagcatttc
 cttttctctg cagctttgcc agtatctgtt gttttttgac tttttaataa tagccattct
 gactagtgtg agatggtatc tcatgatttt gatttgcatt tccctgatga ttaatgatga
 tgagtatttt ttttcatgtg cttgttgacg acatgaatct cttcttttga gaagtgtctg
 ttcgtgttct ttgcccattt tttaataggg ttatttgttt ttgattgttg attggtttaa
 gttccttata gattctggat attagacttc tgtcaaatgc atagttttca gatatgttct
 cccattctgt aggttgtctg tttatgctgt tgatactttc ttttgctgtg taaaagctct
 ttagtttagt taggtcccac ttgtcgattt ttgcttttgt tgcaattgct tttggtgact
 tagctaaaaa ttctttgcca agactgatgt caagaagggt atttcctagg ttttcttcta
 ggattcttat catttgaggt ctgacattta aatctttatc ttgagttaat ttttgtatat
 ggtgaaaggt aagggactag tttcattctt ctgtgtatgg ctagccagtt atcccagcac
 caattatcga ctaaggagtc ctttcccccg cttgtttttg tcagccttgc caaagatcag
 atggtcatag gtgttccatt gatctatatg tctgtttttg taccagtact atgctgtttt
 cattactcta gctttgtagt atagtttgag gttgggtagt gtgatggctc tagttttgct
 ctttttgctt aggattgcct tggctatcca ggatctcttt tatttccata tgaattttag
 aatagttttc tctaattatg ttaagaatgt cattggtaat ttgataggaa tagtgttaaa
 tctgtaaact gctttgggca gtatggccat tttaacaata ttgatccttt caatccatga
 gcatagaatg tttttccatt tatttgtgtt gtctttgatt tctttcatca gtgttttgta
 gttctccttg taaagatctt ttgcctcctt ggttagctgt attcctaagt atttcatttt
 ctttgtgact attgtaaatg gggttgtgtc ttgatttgat tctcagcctg gctgttattg
 gtgtatagaa atgctactta tttctatact ttgacttcat atactgaaat atgactaaga
 tcatttatca gctcttatag acttttaatg aagtctttag gattttctaa atatagaatc
 atattttcag tgaagggaga tagtttgact tcctatttga atgactttta tttctttctc
 ttatctgatt tctctggtta gcattttcca tctttgtata taccaagcca ttcatgagat
 atactggtgt ctccaactcc agccccacag aattcattct agccttcccc tcttgcttac
 ctgtaacctc ccactccaat cgtggtacct atcatcaact acccatttac ttatttgttc
 aacttactta ggtcagctct tttccagtca caccctttag tgcagttatg ttgtatattt
 gtagtacaac tgttagattc atttgcttcc atcctaagat ctctgacatc caagctgatt
 ttttatagtt tgcatacatt caagttcact gcttgtgatg tgcagttcta tggactttaa
 aaaatgcagt tatgcaccca tcaacccagt accatgcaga atagttccac caccctaaac
 tgttcctgca tgtccccttt gtagtcaacc actcctccaa tccaccaatc cttggcaacc
 actgacctat tttctgtcta tacttttgcc tttccagaat gtcatatgaa tgaaataata
 cgatatgtat cctttaggat ctggcttctt ccccttagta aaatgcattt aagattcatc
 atgttgttgt aggaatcaat tgctcattct tttttattgc agagtagtgt accatggaat
 gtatacacca cagtttgtct atccattccc ctgctgaaag acatcttcac tgtttccagt
 ttttagtaat ta
 Y
 ggataaagct gctccaaaca tttatgtgca agtttttgaa tgaatataaa ttttcaactc
 acttgagaaa tacctaggag tatgacttct gggtcatatg gtaagtgtat gtttaacttt
 atgagaaact ggcaaatggc tttccagagG CTTTTAAAAA ATATTACAGC ATAGACTGCA
 GGTTGAAAAG CAGTCTTAAA TCAGTTCAAC CATAAAATTC AATATAGCAT TAAGCATTAA
 TAGTTTATCA ACATAATTTT TAAAACTATT CTAGTTAAAA GCTCCTCTAA AAATGTCAAC
 AATTGTGGGT AACTGAAGAT CTCAGGCCAA TTATTTATCT GTGAATAGT

  Submitted Frequency for ss11427364 back to top
There is no frequency submission for ss11427364.


  dbSNP summary of Genotypes for ss11427364 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-CEU224224T=0.57589287
C=0.42410713C/T=0.49107143
T/T=0.33035713
C/C=0.17857143
Pr(chiSq=0.003,df=1)
=1.000		Genotype
Freq.
HapMap-HCB
- EAST ASIA 		8686T=0.98837209
C=0.01162791T/T=0.97674417
C/T=0.02325581
Pr(chiSq=0.000,df=1)
=1.000		Genotype
Freq.
HapMap-YRI226226T=0.92035401
C=0.07964602T/T=0.84070796
C/T=0.15929204
Pr(chiSq=0.129,df=1)
=0.752		Genotype
Freq.
HAPMAP-ASW9898T=0.82653064
C=0.17346939T/T=0.65306121
C/T=0.34693879
Pr(chiSq=0.684,df=1)
=0.439		Genotype
Freq.
HAPMAP-CHB8282T=0.96341461
C=0.03658536T/T=0.92682928
C/T=0.07317073
Pr(chiSq=0.004,df=1)
=1.000		Genotype
Freq.
HAPMAP-CHD170170T=0.96470588
C=0.03529412T/T=0.92941177
C/T=0.07058824
Pr(chiSq=0.008,df=1)
=1.000		Genotype
Freq.
HAPMAP-GIH176176T=0.87500000
C=0.12500000T/T=0.77272725
C/T=0.20454545
C/C=0.02272727
Pr(chiSq=0.371,df=1)
=0.584		Genotype
Freq.
HAPMAP-LWK178178T=0.89325845
C=0.10674157T/T=0.80898875
C/T=0.16853933
C/C=0.02247191
Pr(chiSq=1.201,df=1)
=0.273		Genotype
Freq.
HAPMAP-MEX100100T=0.72000003
C=0.28000000T/T=0.51999998
C/T=0.40000001
C/C=0.08000000
Pr(chiSq=0.003,df=1)
=1.000		Genotype
Freq.
HAPMAP-MKK286286T=0.83916086
C=0.16083916T/T=0.71328670
C/T=0.25174826
C/C=0.03496503
Pr(chiSq=0.649,df=1)
=0.439		Genotype
Freq.
HAPMAP-TSI172172T=0.58139533
C=0.41860464C/T=0.41860464
T/T=0.37209302
C/C=0.20930232
Pr(chiSq=1.686,df=1)
=0.200		Genotype
Freq.

  Submitted individual genotype for ss11427364 back to top
There is no individual genotype data for ss11427364.

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