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Submitted SNP(ss) Details: ss115964468           
Submitter
HandleILLUMINA-UK
Submitter SNP IDNA18507_000031899_NCBI36.1_chr7_19073030
RefSNP(rs#)rs429
Submitted Batch IDILLUMINA_WTSI:NA18507_c7
Submitted DateJan 16, 2009
Publication Cited18987734
First entry to dbSNPJan 16 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodILLUMINA SEQUENCING
Ascertainment Samplesize2
PopulationYRI
Allele
Observed AlleleC/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 8
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss115964468|allelePos=251|len=501|taxid=9606|alleles='C/G'|mol=Genomic
 AGCCAATAAT TTCACATCTT GGTATTTTCA CTCCTATTTT CATTATCATT AACAATTCTT
 TCTAAAAAAT AGTTTAATTG GTAGACAACA TTTCAACATA AGGATGAATG CTGCAATTTA
 TTTTCTAATA TAAGACATTA ATGATAATTA CGTTCTATAT CTTATAATTA ATTCTATTCC
 AAATATCTTG ACACATACAT TTTTATTTGC ATTTGCTCAG GACAGAATCT AATAACTATC
 ATTATTGGCA
 S
 AAAAGGGAAT GAGTGAACAT CATTGACTTA CCTGTCATTA TGATACAGGA ACCAGGATAG
 ATTTGCTAAT ATAAGATACA AGATTGGAAT TTTTTAAAAT TTGAATTTCA TTTAATTACA
 AATGAGGCCA GATTATTTTC AATACCAGTT GTATTTATCA ACAATTAATT GCTTACATCT
 ATTATGCCTT TGCTTACTTT TGCTTTACGT CTACTATCCC GTTGCTTACA TCCACTACCC
 CTGATTCCCT

  Submitted Frequency for ss115964468 back to top
There is no frequency submission for ss115964468.


  dbSNP summary of Genotypes for ss115964468 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU214214G=0.97196263
C=0.02803738G/G=0.94392526
C/G=0.05607476
Pr(chiSq=0.005,df=1)
=1.000
Genotype
Freq.
HapMap-JPT168168G=0.99404764
C=0.00595238G/G=0.98809522
C/G=0.01190476
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HapMap-YRI214214C=0.80841124
G=0.19158879C/C=0.62616825
C/G=0.36448598
G/G=0.00934579
Pr(chiSq=3.339,df=1)
=0.100
Genotype
Freq.
HAPMAP-CHD170170G=0.99411762
C=0.00588235G/G=0.98823529
C/G=0.01176471
Pr(chiSq=0.000,df=1)
=1.000
Genotype
Freq.
HAPMAP-TSI168168G=0.95833331
C=0.04166667G/G=0.91666669
C/G=0.08333334
Pr(chiSq=0.013,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss115964468 back to top
There is no individual genotype data for ss115964468.