NCBI
dbSNP

dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Submitted SNP(ss) Details: ss117989610           
Submitter
HandleILLUMINA-UK
Submitter SNP IDNA18507_000009765_NCBI36.1_chr17_7518840
RefSNP(rs#)rs1625895
Submitted Batch IDILLUMINA_WTSI:NA18507_c17
Submitted DateJan 20, 2009
Publication Cited18987734
First entry to dbSNPJan 20 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodILLUMINA SEQUENCING
Ascertainment Samplesize2
PopulationYRI
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 1
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss117989610|allelePos=251|len=501|taxid=9606|alleles='C/T'|mol=Genomic
 AGAGACGGGG TTTCACCGTT AGCCAGGATG GTCTCGATCT CCCAACCTCG TGATCCGCCT
 GCCTTGGCCT CCCAAAGTGC TGGGATTACA GGCATGAGCC ACTGCGCCCA GCCAAGCAGG
 GGAGGCCCTT AGCCTCTGTA AGCTTCAGTT TTTTCAACTG TGCAATAGTT AAACCCATTT
 ACTTTGCACA TCTCATGGGG TTATAGGGAG GTCAAATAAG CAGCAGGAGA AAGCCCCCCT
 ACTGCTCACC
 Y
 GGAGGGCCAC TGACAACCAC CCTTAACCCC TCCTCCCAGA GACCCCAGTT GCAAACCAGA
 CCTCAGGCGG CTCATAGGGC ACCACCACAC TATGTCGAAA AGTGTTTCTG TCATCCAAAT
 ACTCCACACG CAAATTTCCT TCCACTCGGA TAAGATGCTG AGGAGGGGCC AGACCTAAGA
 GCAATCAGTG AGGAATCAGA GGCCTGGGGA CCCTGGGCAA CCAGCCCTGT CGTCTCTCCA
 GCCCCAGCTG

  Submitted Frequency for ss117989610 back to top
There is no frequency submission for ss117989610.


  dbSNP summary of Genotypes for ss117989610 back to top
No sufficient data to compute Hardy-weinberg probability for ss117989610.


  Submitted individual genotype for ss117989610 back to top
There is no individual genotype data for ss117989610.

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement