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Submitted SNP(ss) Details: ss119257016           
Submitter
HandleILLUMINA-UK
Submitter SNP IDNA18507_000249609_NCBI36.1_chr1_234778241
RefSNP(rs#)rs1041939
Submitted Batch IDILLUMINA_WTSI:NA18507_c1
Submitted DateJan 21, 2009
Publication Cited18987734
First entry to dbSNPJan 21 2009 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodILLUMINA SEQUENCING
Ascertainment Samplesize2
PopulationYRI
Allele
Observed AlleleC/A
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 15
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss119257016|allelePos=251|len=501|taxid=9606|alleles='C/A'|mol=Genomic
 CCTGGAGTAC AAACACAGAT TTAAAGAGCT CAGCAGTATT GACACGCTGG AAATTAATGG
 AGACATCCAC TTACTGGAAG TAAGGAGCTG GTAGCCTACC TACACAGCTG CTACAAAAAC
 CAAAATACAG AATGGCTTCT GTGATACTGG CCTTGCTGAA ACGCATCTCA CTGTCATTCT
 ATTGTTTATA TTGTTAAAAT GAGCTTGTGC ACCATTAGGT CCTGCTGGGT GTTCTCAGTC
 CTTGCCATGA
 M
 GTATGGTGGT GTCTAGCACT GAATGGGGAA ACTGGGGGCA GCAACACTTA TAGCCAGTTA
 AAGCCACTCT GCCCTCTCTC CTACTTTGGC TGACTCTTCA AGAATGCCAT TCAACAAGTA
 TTTATGGAGT ACCTACTATA ATACAGTAGC TAACATGTAT TGAGCACAGA TTTTTTTTGG
 TAAAACTGTG AAGAGCTAGG ATATATACTT GGTGAAACAA ACCAGTATGT TCCCTGTTCT
 CTTGAGCTTC

  Submitted Frequency for ss119257016 back to top
There is no frequency submission for ss119257016.


  dbSNP summary of Genotypes for ss119257016 back to top

Population ID
 -Class
Total
Sample
(2N)
Founder
(2N)
Major
Allele
Freq.
Minor
Allele
Freq.
Genotype
Freq.
HWE Goodness of FitData
Source
HapMap-CEU224224A=0.97767860
C=0.02232143A/A=0.95535713
A/C=0.04464286
Pr(chiSq=0.003,df=1)
=1.000
Genotype
Freq.
HapMap-HCB
EAST ASIA
8686A=0.86046511
C=0.13953489A/A=0.72093022
A/C=0.27906978
Pr(chiSq=0.294,df=1)
=0.655
Genotype
Freq.
HapMap-JPT172172A=0.80813956
C=0.19186047A/A=0.65116280
A/C=0.31395349
C/C=0.03488372
Pr(chiSq=0.013,df=1)
=1.000
Genotype
Freq.
HapMap-YRI226226A=0.74778759
C=0.25221238A/A=0.54867256
A/C=0.39823008
C/C=0.05309734
Pr(chiSq=0.351,df=1)
=0.584
Genotype
Freq.
HAPMAP-ASW9898A=0.90816325
C=0.09183674A/A=0.81632656
A/C=0.18367347
Pr(chiSq=0.088,df=1)
=1.000
Genotype
Freq.
HAPMAP-CHB8282A=0.85365856
C=0.14634146A/A=0.70731705
A/C=0.29268292
Pr(chiSq=0.327,df=1)
=0.584
Genotype
Freq.
HAPMAP-CHD170170A=0.85882354
C=0.14117648A/A=0.72941178
A/C=0.25882354
C/C=0.01176471
Pr(chiSq=0.386,df=1)
=0.584
Genotype
Freq.
HAPMAP-GIH176176A=0.89772725
C=0.10227273A/A=0.79545456
A/C=0.20454545
Pr(chiSq=0.222,df=1)
=0.655
Genotype
Freq.
HAPMAP-LWK180180A=0.77777779
C=0.22222222A/A=0.58888888
A/C=0.37777779
C/C=0.03333334
Pr(chiSq=0.776,df=1)
=0.403
Genotype
Freq.
HAPMAP-MEX100100A=0.92000002
C=0.08000000A/A=0.83999997
A/C=0.16000000
Pr(chiSq=0.058,df=1)
=1.000
Genotype
Freq.
HAPMAP-MKK284284A=0.73239434
C=0.26760563A/A=0.54225349
A/C=0.38028169
C/C=0.07746479
Pr(chiSq=0.127,df=1)
=0.752
Genotype
Freq.
HAPMAP-TSI176176A=0.96022725
C=0.03977273A/A=0.92045456
A/C=0.07954545
Pr(chiSq=0.012,df=1)
=1.000
Genotype
Freq.

  Submitted individual genotype for ss119257016 back to top
There is no individual genotype data for ss119257016.

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