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Submitted SNP(ss) Details: ss12064564           
Submitter
HandleWI_SSAHASNP
Submitter SNP IDchr10.NT_030059.10_8137388
RefSNP(rs#)rs7896192
Submitted Batch IDWI-WGS-200306-B
Submitted DateJul 04, 2003
Publication Cited[1] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPJul 4 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type		Genomic
MethodWI-WGS-200306
Ascertainment Samplesize2
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusbyFreq
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype Summarypopulation count: 4
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:S213P63379FE7.T0position:316quality:41

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12064564|allelePos=201|len=763|taxid=9606|alleles='A/G'|mol=Genomic
 ATTTGACACT TTTGCTTTAT GAACATGTGA AGATTATTCA AAAGTAAGCT GTTGGTGATT
 TTTTTCTTCC AAGAAAGCAT GCCACAGGGC AACTTCTAGG GTTGGTTCTC ATCTAGTCCT
 GTGCTCCACA CTATCTGCAT CTGCACTTAA GTTTCAATAT TAGATAACTC ACATGTTTAA
 ACTATGAAGA AAGAGTTAAA
 R
 CATCCTGAGA ATGCTAGTAA GTATGTATTT TTGAAAGGAC TTCCAAAATT TGAGTTTAAA
 GAGGTAAACT CCTTTTACAT GACAAAGTTA CTTAGAAACA CTACTGCTGT TTCCCTCTCC
 CTTGCCTTCT CCCTGTCCCA TGCATACCCC CAGCTGTGTT CCAGAATGAT GGCACATAAA
 GTAAACATTC ATATTTATTT CCCttttttt gttttttttt tttttttttt tttttgcttg
 tttgttttgt ttttttgttt gagacagtct cactcaatca cccaggctgg agtgcagtgg
 caacatctca gctcactgca acctctacct cctgagttca agcgattctc ctgcctcagc
 ctcccgagca gctgggatta caggcgcctg cccccacgcc tggctaattt ttgtattttt
 agtagagatg gggtttcgcc atgttggcca gactggtctt gaactcttga cctcaagtga
 tccgcccacc tcggcctccc aaagtgctga gattacaggc atgagtcact gtgcctggcc
 tcttattttt tctttGGTTA AA

  Submitted Frequency for ss12064564 back to top
There is no frequency submission for ss12064564.


  dbSNP summary of Genotypes for ss12064564 back to top

Population ID
 -Class		Total
Sample
(2N)		Founder
(2N)		Major
Allele
Freq.		Minor
Allele
Freq.		Genotype
Freq.		HWE Goodness of FitData
Source
HapMap-YRI120120A=0.97500002
G=0.02500000A/A=0.94999999
A/G=0.05000000
Pr(chiSq=0.002,df=1)
=1.000		Genotype
Freq.

  Submitted individual genotype for ss12064564 back to top
There is no individual genotype data for ss12064564.

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