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Submitted SNP(ss) Details: ss1289338061           
Submitter
Handle1000GENOMES
Submitter SNP IDPHASE3_V1_2742
RefSNP(rs#)rs116030099
Submitted Batch IDPhase3_V1
Submitted DateAug 16, 2014
Publication CitedN.D.
First entry to dbSNPAug 16 2014 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodSEQ
Ascertainment Samplesize5008
PopulationN.D.
Allele
Observed AlleleT/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence
Variation
Frequency Submissionpopulation count: 5
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss1289338061|allelePos=26|len=51|taxid=9606|alleles='T/C'|mol=Genomic
 ATTCCTACAA TTTCATTCTT TTTGA
 Y
 ACTAGGGTAA ATTGAATTAT TTTCT

  Submitted Frequency for ss1289338061 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
AMR694T=0.91640002
C=0.08360000
Phase3_V1-AMR1000GENOMES
AFR1322T=0.99390000
C=0.00610000
Phase3_V1-AFR1000GENOMES
EAS1008T=0.99800003
C=0.00200000
Phase3_V1-EAS1000GENOMES
SAS978T=0.98159999
C=0.01840000
Phase3_V1-SAS1000GENOMES
EUR1006T=0.87970001
C=0.12030000
Phase3_V1-EUR1000GENOMES


  dbSNP summary of Genotypes for ss1289338061 back to top
No sufficient data to compute Hardy-weinberg probability for ss1289338061.


  Submitted individual genotype for ss1289338061 back to top
There is no individual genotype data for ss1289338061.