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Submitted SNP(ss) Details: ss1292108270           
Submitter
Handle1000GENOMES
Submitter SNP IDPHASE3_V1_2886128
RefSNP(rs#)rs12025301
Submitted Batch IDPhase3_V1
Submitted DateAug 16, 2014
Publication CitedN.D.
First entry to dbSNPAug 16 2014 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodSEQ
Ascertainment Samplesize5008
PopulationN.D.
Allele
Observed AlleleA/G
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeN.D.
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Homozygote Detected
PCR Confirmed
In Expressed Sequence
Variation
Frequency Submissionpopulation count: 5
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss1292108270|allelePos=26|len=51|taxid=9606|alleles='A/G'|mol=Genomic
 AAGTACATAC AAATGTGGGC CCCTC
 R
 AAGAAGCCAC CTTTATATGC AGTCA

  Submitted Frequency for ss1292108270 back to top

Population ID
 -Class
Sample
(2n)
Major
Allele
Freq.
Minor
Allele
Freq.
Estimated
Heterozygosity
+/-std.err.
Genotype
Freq.
Submitted
Hetero-
zygosity
Submission
Batch
Submitter
AMR694A=0.93080002
G=0.06920000
Phase3_V1-AMR1000GENOMES
AFR1322A=0.97130001
G=0.02870000
Phase3_V1-AFR1000GENOMES
EAS1008A=0.78170002
G=0.21830000
Phase3_V1-EAS1000GENOMES
SAS978A=0.78939998
G=0.21060000
Phase3_V1-SAS1000GENOMES
EUR1006A=0.86479998
G=0.13519999
Phase3_V1-EUR1000GENOMES


  dbSNP summary of Genotypes for ss1292108270 back to top
No sufficient data to compute Hardy-weinberg probability for ss1292108270.


  Submitted individual genotype for ss1292108270 back to top
There is no individual genotype data for ss1292108270.