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Submitted SNP(ss) Details: ss12953977           
Submitter
HandleSC_SNP
Submitter SNP IDNT_008583.15_11051851
RefSNP(rs#)rs2127348
Submitted Batch IDCHR10_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to finished sequence
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR10_OVERLAP_SNPS
Ascertainment Samplesize8
PopulationN.D.
Allele
Observed AlleleA/C
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG CodeUnknown
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:10bA338F14-30d03.p1cposition:67quality:35sequence:10bA338F14-19d01.p1cposition:227quality:33sequence:10bA338F14-30b05.p1cposition:-223quality:42sequence:10bA338F14-5h12.q1cposition:-375quality:46sequence:10bA338F14-8e03.q1cposition:270quality:44sequence:10bA570G20-14h12.q1cposition:-419quality:56sequence:10bA338F14-30e08.p1cposition:129quality:35

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12953977|allelePos=151|len=301|taxid=9606|alleles='A/C'|mol=Genomic
 GCCTGCTTTA GCCTTTGTAT TTTGTAAAAC TGTTTCTAAT GGCCTTGTAT GGAACTTCTT
 CACCTAGGAA TTCTAATCAT ATACTACTTA CATGATATGA GTCTTGAACT TCAAATCTGG
 ATTTTTCTAT TTAAACCAGA AAGTAAATAA
 M
 TGTAATAAAA ATAGAAACAT ACCAACACAA CTCCCCAAAA CTATGTGCAG CAACTCTGGC
 TACACTCTCA GAGAGACCCC AACATTTTTG GTTACTTGGA CATCCTGTAA CTGATCATTT
 TATTTTGCCA CACGCTTCCC CTAGCACACT

  Submitted Frequency for ss12953977 back to top
There is no frequency submission for ss12953977.


  dbSNP summary of Genotypes for ss12953977 back to top
No sufficient data to compute Hardy-weinberg probability for ss12953977.


  Submitted individual genotype for ss12953977 back to top
There is no individual genotype data for ss12953977.