Submitted SNP(ss) Details: ss1298676

Submitted SNP(ss) Details: ss1298676

Submitter
Handle	TSC-CSHL
Submitter SNP ID	TSC0204928
RefSNP(rs#)	rs874515
Submitted Batch ID	TSC-SANGER-19-25-000905-RESUBMISSION
Submitted Date	Sep 06, 2000
Publication Cited	N.D.
First entry to dbSNP	Sep 6 2000 12:00:00:000AM

Resource Links
GenBank Accession	AL021154.1
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	TSC-SANGER-19-25
Ascertainment Samplesize	10
Population	N.D.

Allele
Observed Allele	C/G
Ancestral Allele
Allele Origin	N/A
SNP Class	SNV
CpG Code	nonCpG

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 4
Genotype Summary	population count: 9
Genotype Submission	N.D.
Haplotype	N.D.

Fasta sequence (Legend)

 CAGACATCCA AAGCACTGGG TAAGGAGGCC ATCCTGTAGA CTGTGGCTCT GACAGTTACT
 CCAGGGTGAC CTTTAGCAGG TCCCCTAACA CCTATGAGCC CTGAGGGGGG TGAAATGGAA
 GCACCCCCCA ACCAGTCCAC GTTACCACAT AGACTGTAAA ATGCCGCCCA CTAGTGAATG
 GCCTCTTTTG AAACACTTTC TTGCTGTTCT CTTTGTATAT GGAGTTGAAC CTGCAGTGGA
 AAATGTGATT GACAGGGATT AACATCTAGG CCCCTTGGGG CCCACCTGGA TGAACCCTCA
 GTGGAAGCTG GGATCATGAA CAATGGATAT GGAACCACTG TAAGACCAGG TGGCCCCTGG
 CCCTGATGAA GAGAGTCAGG GTGTATGTGG G
 S
 TGGGGAATGG AGCAATATGG TTGTCTGTCC TGATGGTCCT GAATCTCTCA TCTCTTCCCT
 GCATAACCTA CAGTGGCATG TCTTGAAACC CCCttttttt tttggagatg gaatctcact
 ctgttgccca gatgctcagc tcactgtaac ctctgcctcc tgggttcaag tgattctcct
 gcctcaacct tcccttccca gtagctggga ttacaggcac gtggcaccat gtccagctaa
 tgtttgtatt ttagtagaaa accagggttt atcaggtccg gccagtcctt tcttggaact
 cctcccctaa gggtgatgtg cccC

Submitted Frequency for ss1298676

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Estimated Heterozygosity +/-std.err.	Submission Batch	Submitter
CEL_asian - EAST ASIA	58	G=0.55000001	C=0.44999999	0.495 +/-0.018	TSC-CELERA-CEL_asian-Sep-21-2003-ALLELE_FREQUENCY	TSC-CSHL
CEL_african_american - NORTH AMERICA	58	C=0.93000001	G=0.07000000	0.130 +/-0.081	TSC-CELERA-CEL_african_american-Sep-21-2003-ALLELE_FREQUENCY	TSC-CSHL
CEL_caucasian - MULTI-NATIONAL	60	C=0.72000003	G=0.28000000	0.403 +/-0.072	TSC-CELERA-CEL_caucasian-Sep-21-2003-ALLELE_FREQUENCY	TSC-CSHL
CEL_caucasian_CEPH - MULTI-NATIONAL	324	C=0.70999998	G=0.28999999	0.412 +/-0.030	TSC-CELERA-CEL_caucasian_CEPH-Sep-21-2003-ALLELE_FREQUENCY	TSC-CSHL

dbSNP summary of Genotypes for ss1298676

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
CEL_african_american - NORTH AMERICA	58	58	C=0.93103451	G=0.06896552	C/C=0.86206895 C/G=0.13793103	Pr(chiSq=0.021,df=1) =1.000	Genotype Freq.
CEL_asian - EAST ASIA	58	58	G=0.55172414	C=0.44827586	C/G=0.55172414 G/G=0.27586207 C/C=0.17241380	Pr(chiSq=0.386,df=1) =0.584	Genotype Freq.
CEL_caucasian - MULTI-NATIONAL	60	60	C=0.71666664	G=0.28333333	C/G=0.50000000 C/C=0.46666667 G/G=0.03333334	Pr(chiSq=1.603,df=1) =0.251	Genotype Freq.
CEL_caucasian_CEPH - MULTI-NATIONAL	308	308	C=0.69480520	G=0.30519480	C/C=0.48701298 C/G=0.41558442 G/G=0.09740259	Pr(chiSq=0.062,df=1) =1.000	Genotype Freq.
HapMap-CEU	120	120	G=0.78333336	C=0.21666667	G/G=0.58333331 C/G=0.40000001 C/C=0.01666667	Pr(chiSq=1.910,df=1) =0.200	Genotype Freq.
HapMap-HCB - EAST ASIA	90	90	C=0.52222222	G=0.47777778	C/G=0.46666667 C/C=0.28888890 G/G=0.24444444	Pr(chiSq=0.189,df=1) =0.752	Genotype Freq.
HapMap-JPT	88	88	C=0.69318181	G=0.30681819	C/C=0.47727272 C/G=0.43181819 G/G=0.09090909	Pr(chiSq=0.010,df=1) =1.000	Genotype Freq.
HapMap-YRI	120	120	G=0.91666669	C=0.08333334	G/G=0.85000002 C/G=0.13333334 C/C=0.01666667	Pr(chiSq=0.972,df=1) =0.343	Genotype Freq.

Submitted individual genotype for ss1298676

There is no individual genotype data for ss1298676.

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