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Submitted SNP(ss) Details: ss12992989           
Submitter
HandleSC_SNP
Submitter SNP IDNT_004350.15_33999
RefSNP(rs#)rs2840531
Submitted Batch IDCHR1_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_OVERLAP_SNPS
Ascertainment Samplesize12
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:1dJ713A8-29c07.p1cposition:263quality:51sequence:1dJ713A8-20a04.p1cposition:208quality:51sequence:1dJ713A8-1e03.p1cposition:208quality:43sequence:1dJ713A8-36c06.p1cposition:444quality:31sequence:1dJ713A8-18b08.p1cposition:-233quality:36sequence:1dJ713A8-7h12.p1cposition:-174quality:37sequence:1dJ713A8-34f04.q1cposition:-423quality:23sequence:1dJ713A8-24b06.q1cposition:-337quality:42sequence:1dJ713A8-13b07.q1cposition:-177quality:43sequence:1dJ713A8-35g01.q1cposition:-242quality:41sequence:1dJ713A8-26f02.q1cposition:-243quality:36

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss12992989|allelePos=201|len=401|taxid=9606|alleles='C/T'|mol=Genomic
 CAGAGAGGTT TAGCTTCACA TCAGAGTGAA AGCAGCAGCC CAGCCTCCCA GGGTTGGTGT
 CGGATGCACC CGTGAGGCCC AGGCAGAGCT CGGCACCCAA CTCCAAATGT CTGTGGTTCA
 AGCCCCAGCG GGTCTTACAA AAACAAAAGC ACGTTCCTCT AGGTTTCCCA AGGGAAATAT
 CTTTTGTGCT GGAGAATTTA
 Y
 GGCTGGACAC TCACATCATC GTCAAGCCAG AAACAGCCTG AGCCGGGCTG AGAGTCGGGG
 GAGGCCCCCC AGGTAGGATC CGCCCCAGAC TCAGGCAGTg gggccggcgc ggggggcccg
 cgcggggTAG GGTGCGATGC AGGCACGAGG CTGGTTTCAA TCGAGACTTT GGCTCTGAAA
 ATCTCTCCAA GTAGAAGGCA

  Submitted Frequency for ss12992989 back to top
There is no frequency submission for ss12992989.


  dbSNP summary of Genotypes for ss12992989 back to top
No sufficient data to compute Hardy-weinberg probability for ss12992989.


  Submitted individual genotype for ss12992989 back to top
There is no individual genotype data for ss12992989.