Submitter | Handle | SC_SNP | Submitter SNP ID | NT_077960.1_90048 | RefSNP(rs#) | rs9442371 | Submitted Batch ID | CHR1_Overlap_SNPs | Submitted Date | Oct 22, 2003 | Publication Cited | [1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP [2] SSAHA: A Fast Search Method for Large DNA Databases | First entry to dbSNP | Oct 22 2003 12:00:00:000AM |
| Resource Links | GenBank Accession | NT_077960
| Submitted Gene Name | N.D | Submitted Gene ID | N.D. | Submitted SNP Synonyms | N.D | Submitted linkout | N.D |
| Assay | Species | Homo sapiens | Molecular Type | Genomic | Method | CHR1_OVERLAP_SNPS | Ascertainment Samplesize | 10 | Population | N.D. |
| Allele | Observed Allele | C/T | Ancestral Allele | N.D. | Allele Origin | N/A | SNP Class | SNV | CpG Code | c/t_g |
| | Variation | Frequency Submission | N.D. | Genotype Summary | N.D. | Genotype Submission | N.D. | Haplotype | N.D. |
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Comment | sequence:1bK3032I24-5o24.p1kposition:513quality:40sequence:1bK3032I24-3i19.p1kposition:-227quality:56sequence:1bK3032I24-3a01.p1kposition:531quality:37sequence:1bK3032I24-4k02.q1kposition:270quality:56sequence:1bA89F3-5o03.p1kposition:327quality:56sequence:1bK3032I24-2b23.q1kposition:506quality:42sequence:1bK3032I24-4b07.q1kposition:-456quality:40sequence:1bA89F3-5o03.q1kposition:-609quality:37sequence:1bK3032I24-2e22.q1kposition:-420quality:51 |
>gnl|dbSNP|ss13052165|allelePos=201|len=401|taxid=9606|alleles='C/T'|mol=Genomic TCCGTACTGA AACGGGTCAG AGACAGGCGA GGTCAGAGTG GGACCTGGAC AGCAGGGACA
GTGCAGGCCT CAGCCCTCAC CGGAGGCTCT CGGGAGTGGG CATATGGCAC AGGCGCCCGG
GGCTGTTTAC TCTGACCAGG TGGGAACCCA GATGCCCCCT GCCCCTAAGG CGCCCTCAGA
GCTCCAGCTC GGGAAAGGGA
Y
GGCTTCCTCC TGCCCGGCTG TGTCCTCTCA TTTACACCCT GGGCCCCGGG GCCTGGACAA
GGGCCAGGCG ATCCCCGAAG ACAGAGATGT GGGTCCCAGA GTATCATGCA CCTCAGGGGG
CGACAAGCAG GCCGTAGTcc caagacctcg aatgtgacct tatttagaag aaggggcttt
gcagGGGGTT ACGTCAGGGT
There is no frequency submission for ss13052165.
No sufficient data to compute Hardy-weinberg probability for ss13052165.
There is no individual genotype data for ss13052165.
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