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Submitted SNP(ss) Details: ss13052165           
Submitter
HandleSC_SNP
Submitter SNP IDNT_077960.1_90048
RefSNP(rs#)rs9442371
Submitted Batch IDCHR1_Overlap_SNPs
Submitted DateOct 22, 2003
Publication Cited[1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases
First entry to dbSNPOct 22 2003 12:00:00:000AM
Assay
SpeciesHomo sapiens
Molecular
Type
Genomic
MethodCHR1_OVERLAP_SNPS
Ascertainment Samplesize10
PopulationN.D.
Allele
Observed AlleleC/T
Ancestral AlleleN.D.
Allele OriginN/A
SNP ClassSNV
CpG Codec/t_g
Validation
Validation StatusNot Validated
HWE Goodness of Fitnot applicable
Variation
Frequency SubmissionN.D.
Genotype SummaryN.D.
Genotype SubmissionN.D.
HaplotypeN.D.
Comment
sequence:1bK3032I24-5o24.p1kposition:513quality:40sequence:1bK3032I24-3i19.p1kposition:-227quality:56sequence:1bK3032I24-3a01.p1kposition:531quality:37sequence:1bK3032I24-4k02.q1kposition:270quality:56sequence:1bA89F3-5o03.p1kposition:327quality:56sequence:1bK3032I24-2b23.q1kposition:506quality:42sequence:1bK3032I24-4b07.q1kposition:-456quality:40sequence:1bA89F3-5o03.q1kposition:-609quality:37sequence:1bK3032I24-2e22.q1kposition:-420quality:51

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|ss13052165|allelePos=201|len=401|taxid=9606|alleles='C/T'|mol=Genomic
 TCCGTACTGA AACGGGTCAG AGACAGGCGA GGTCAGAGTG GGACCTGGAC AGCAGGGACA
 GTGCAGGCCT CAGCCCTCAC CGGAGGCTCT CGGGAGTGGG CATATGGCAC AGGCGCCCGG
 GGCTGTTTAC TCTGACCAGG TGGGAACCCA GATGCCCCCT GCCCCTAAGG CGCCCTCAGA
 GCTCCAGCTC GGGAAAGGGA
 Y
 GGCTTCCTCC TGCCCGGCTG TGTCCTCTCA TTTACACCCT GGGCCCCGGG GCCTGGACAA
 GGGCCAGGCG ATCCCCGAAG ACAGAGATGT GGGTCCCAGA GTATCATGCA CCTCAGGGGG
 CGACAAGCAG GCCGTAGTcc caagacctcg aatgtgacct tatttagaag aaggggcttt
 gcagGGGGTT ACGTCAGGGT

  Submitted Frequency for ss13052165 back to top
There is no frequency submission for ss13052165.


  dbSNP summary of Genotypes for ss13052165 back to top
No sufficient data to compute Hardy-weinberg probability for ss13052165.


  Submitted individual genotype for ss13052165 back to top
There is no individual genotype data for ss13052165.