Submitter | Handle | SC_SNP | Submitter SNP ID | NT_077960.1_90190 | RefSNP(rs#) | rs9442372 | Submitted Batch ID | CHR1_Overlap_SNPs | Submitted Date | Oct 22, 2003 | Publication Cited | [1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP [2] SSAHA: A Fast Search Method for Large DNA Databases | First entry to dbSNP | Oct 22 2003 12:00:00:000AM |
| Resource Links | GenBank Accession | NT_077960
| Submitted Gene Name | N.D | Submitted Gene ID | N.D. | Submitted SNP Synonyms | N.D | Submitted linkout | N.D |
| Assay | Species | Homo sapiens | Molecular Type | Genomic | Method | CHR1_OVERLAP_SNPS | Ascertainment Samplesize | 8 | Population | N.D. |
| Allele | Observed Allele | A/G | Ancestral Allele | N.D. | Allele Origin | N/A | SNP Class | SNV | CpG Code | c_g/a |
| | Variation | Frequency Submission | N.D. | Genotype Summary | N.D. | Genotype Submission | N.D. | Haplotype | N.D. |
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Comment | sequence:1bK3032I24-5o24.p1kposition:371quality:56sequence:1bA89F3-5o03.p1kposition:185quality:45sequence:1bK3032I24-2e22.q1kposition:-562quality:45sequence:1bK3032I24-3a01.p1kposition:389quality:56sequence:1bK3032I24-3i19.p1kposition:-369quality:56sequence:1bK3032I24-4b07.q1kposition:-598quality:40sequence:1bK3032I24-2b23.q1kposition:364quality:37 |
>gnl|dbSNP|ss13052166|allelePos=201|len=401|taxid=9606|alleles='A/G'|mol=Genomic GGAACCCAGA TGCCCCCTGC CCCTAAGGCG CCCTCAGAGC TCCAGCTCGG GAAAGGGACG
GCTTCCTCCT GCCCGGCTGT GTCCTCTCAT TTACACCCTG GGCCCCGGGG CCTGGACAAG
GGCCAGGCGA TCCCCGAAGA CAGAGATGTG GGTCCCAGAG TATCATGCAC CTCAGGGGGC
GACAAGCAGG CCGtagtccc
R
agacctcgaa tgtgacctta tttagaagaa ggggctttgc agGGGGTTAC GTCAGGGTCT
CAGGTGTGAT CGCCCAGGGT TCCCCGGGCA GGCCCTGAAA CAACGGCCAG GGCCCACCTG
AGAGAGAGGC AGAGAGAGAA GACGCAGAGG TGGGGGAGAC GCCGTGGGAC CAGGGGACAG
AGACGGGCAA CGCAGCCACA
There is no frequency submission for ss13052166.
No sufficient data to compute Hardy-weinberg probability for ss13052166.
There is no individual genotype data for ss13052166.
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