| Submitter | | Handle | SC_SNP | | Submitter SNP ID | NT_077960.1_134737 | | RefSNP(rs#) | rs4072537 | | Submitted Batch ID | CHR1_Overlap_SNPs | | Submitted Date | Oct 22, 2003 | | Publication Cited | [1] Overlap SNPs found by comparing shotgun reads to NCBI Genomic Reference Sequence using SsahaSNP
[2] SSAHA: A Fast Search Method for Large DNA Databases | | First entry to dbSNP | Oct 22 2003 12:00:00:000AM |
| | Resource Links | | GenBank Accession | NT_077960
| | Submitted Gene Name | N.D | | Submitted Gene ID | N.D. | | Submitted SNP Synonyms | N.D | | Submitted linkout | N.D |
| | Assay | | Species | Homo sapiens | Molecular
Type | Genomic | | Method | CHR1_OVERLAP_SNPS | | Ascertainment Samplesize | 8 | | Population | N.D. |
| | Allele | | Observed Allele | T/C | | Ancestral Allele | N.D. | | Allele Origin | N/A | | SNP Class | SNV | | CpG Code | c/t_g |
| | | Variation | | Frequency Submission | N.D. | | Genotype Summary | N.D. | | Genotype Submission | N.D. | | Haplotype | N.D. |
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| Comment | | sequence:1bK3032I24-4g16.q1kposition:95quality:51sequence:1bK3032I24-5h18.p1kposition:694quality:23sequence:1bK3032I24-3n17.p1kposition:263quality:43sequence:1bK3032I24-1f06.p1kposition:109quality:39sequence:1bK3032I24-2f02.q1kposition:808quality:40sequence:1bK3032I24-5c18.p1kposition:544quality:32sequence:1bK3032I24-3f05.p1kposition:-273quality:51 |
>gnl|dbSNP|ss13052173|allelePos=201|len=579|taxid=9606|alleles='T/C'|mol=Genomic CGAGAGGAAG CAGAAGAGGG GAAAAGGCCG ATTATCGTAG AAGAGTTAGG AAAATCAATC
AAAGATACCC CCTTGAGAAC AGTTAAGTTC ACAGCTGTGA GTTCTGGAAA CCTTTATGTT
TTAAAAATGA TTCCGAGGAC TCAGAGGGTA AAGCTCGCAC CAACTTAATT TGTTATTGCC
TTTTCTATCA AAGTTATGCT
Y
GTGGCCGGAC ACAGTGGTTC GCAtttggga ggtcaaggcg ggcggatcac ttgaggtcag
gagttcgaga caagcgtggt cagcatgatg aaaccctgtc tctactaaaa atacaaaaaa
attagctgga tgtggtggcg ggcacctata attccagcta ctctggaggc tgaggcagga
caatcgcttg cacctggaag gcggaggttg cagtgagctc agatggcacc attgccctcc
agcctgggca acagagtgag actctgtctc aaaaaaaaaa aaaaaaaaaa aaaaaaaaaa
CCAGTTATGC CTGTAGGTTG CTTGAGAGTC AAACACTTCT GCAAGGCTTG GACACATATG
ATCTTCAGGC CGCGCCGA
There is no frequency submission for ss13052173.
No sufficient data to compute Hardy-weinberg probability for ss13052173.
There is no individual genotype data for ss13052173.
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